SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26214

Length: 1147 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene26214 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Polyphosphoinositide binding protein n=1 Tax=Gossypium hirsutum RepID=Q8VWW0_GOSHI	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	aspartate semialdehyde	-	-	71%

Source	InterPros	Term	Type	Identity
Blast2go	CRAL-TRIO domain	IPR001251	-	71%
Blast2go	Cellular retinaldehyde-binding/triple function, N-terminal	IPR008273	-	71%
Blast2go	CRAL/TRIO, N-terminal domain	IPR011074	-	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKZ9

Fln msg:

Fln protein: MDRLISGQTTCNSVEKQSNGDSNLDYSVSDAVRDKLRLMRDRIEKEDPASKVTDDATLLRFLYARESNVEKACEMFAKYRKWRQTYVPLGYIPETMVGNELKHKFVYMQGCDKVGRPIMVLLLARHIACQSNMEDFKRFVVYAFDKMSASATKGQTKFSIVADFADWAYKNVNLRGTIAAVQTLQDFYPERLGKVYLINRPYIFWAAWKIVSPFIDKVTRQKIVFTDDKYVKETLLKDIDENQLPEIYGGKLPLVPIDDCVVPNWPPITSC*

Protein Length: 273

Fln nts: ATGGGGGCCTCCAATTACATGGAATGCTTCTTTTCCCAGAGAGAGGCGAGAAACCTACTACCAGATGGCAGCCGAGCGCTATCGCTTTCCAACTTCCTATTCGTTTTCTCTCATCAATACGGAAACGAGAGTTGGTATATCAACCAAAGAGATAGTAATTACTATAAACTCCAGGGTGTCTCCAGCTTCAGTTTGGGAGTACTACCAGGGATTCACAGGCGAGCAAA_-_ATGGATCGACTGATCAGCGGCCAAACCACGTGCAATTCAGTCGAGAAGCAGAGCAATGGAGATTCGAACCTCGACTATTCAGTTTCCGATGCGGTCAGAGACAAGCTGCGGCTTATGAGAGACAGAATTGAGAAGGAAGATCCCGCCTCCAAGGTTACAGATGATGCTACTCTTCTACGTTTCTTGTATGCTCGGGAATCAAATGTGGAAAAGGCTTGTGAGATGTTTGCAAAGTATAGAAAATGGAGACAGACTTACGTACCCCTTGGATACATCCCAGAAACAATGGTCGGCAATGAGCTCAAGCACAAATTTGTCTACATGCAAGGATGTGACAAAGTGGGAAGGCCAATAATGGTTCTTCTTCTGGCAAGGCACATTGCTTGCCAGTCGAATATGGAGGATTTTAAACGTTTTGTTGTCTATGCCTTTGATAAAATGTCTGCTAGTGCTACAAAAGGACAGACAAAGTTTTCCATTGTAGCAGATTTTGCTGATTGGGCATACAAGAATGTAAACCTTCGTGGCACTATTGCAGCTGTTCAAACCTTGCAGGACTTCTATCCAGAGCGCTTAGGGAAGGTGTACCTTATTAATCGACCATACATATTTTGGGCAGCATGGAAGATAGTATCTCCTTTTATTGACAAAGTAACAAGGCAAAAGATTGTTTTCACTGACGATAAATATGTCAAAGAAACATTACTGAAGGATATTGATGAAAATCAACTACCTGAAATCTATGGAGGGAAATTACCTTTAGTTCCAATAGATGATTGTGTTGTACCAAATTGGCCCCCAATAACCTCATGTTAG___GAATCTAGAAGAACTTTAATAGCGATGATCATATTGAAGTATACTAGTTGTTCTTTAGTGTTTGTACCGAAATCATAAATTGTTCTCAAATTTATTTCAACTTC

Fln Alignment:

sp_v1.1_unigene26214___MDRLISGQTTCNSVEKQSNGDSNLDYSVSDAVRDKLRLMRDRIEKEDPASKVTDDATLLRFLYARESNVEKACEMFAKYRKWRQTYVPLGYIPETMVGNELKHKFVYMQGCDKVGRPIMVLLLARHIACQSNMEDFKRFVVYAFDKMSASATKGQTKFSIVADFADWAYKNVNLRGTIAAVQTLQDFYPERLGKVYLINRPYIFWAAWKIVSPFIDKVTRQKIVFTDDKYVKETLLKDIDENQLPEIYGGKLPLVPIDDCVVPNWPPITS
A9NKZ9_______________MDRRISGQTTCNSGEKLSNGDSNLDISISDAVRDKLRLMRDRIEEGDPASKVTDDATLQRFLYARELNVEKACEMFAKYRKWRQTCVPLGYIPETMVCNEVKQNFVYMQGFDKMGRPIMVLLLARHIACESSIEDFRRFVVYAFDKMSASATRGQTKFSIIADFDDWAYKNVNLRGTIAAVQTLQDFYPERLGKVYLIHRPYIFWAAWKIVSPFIDKVTRQKIVFTDDKRVKETLLKDIDENQLPEIYGGKLPLVTIQDSVVPNWPPVTS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
932		25	75		0.996473
933		25		75	0.996473
934		25	75		0.996473
936	75			25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain