SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26179

Length: 1342 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26179

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AtRABA1f (Arabidopsis Rab GTPase homolog A1f); GTP binding; K07976 Rab family, other	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	gtp-binding protein	-	-	96%

Source	InterPros	Term	Type	Identity
Blast2go	Small GTPase superfamily	IPR001806	-	96%
Blast2go	Ran GTPase	IPR002041	-	96%
Blast2go	Ras small GTPase, Ras type	IPR003577	-	96%
Blast2go	Small GTPase superfamily, Rho type	IPR003578	-	96%
Blast2go	Small GTPase superfamily, Rab type	IPR003579	-	96%
Blast2go	Small GTP-binding protein domain	IPR005225	-	96%
Blast2go	ADP-ribosylation factor	IPR006688	-	96%
Blast2go	Ras	IPR013753	-	96%
Blast2go	Small GTPase	IPR020851	-	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZD1

Fln msg:

Fln protein: MAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSITVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNKADLRHLRAVSIEDGKAFAERENTYFMETSALESTNVENAFTEVLSQIYRIVSKKALDVGEDPAAVPSKGQTIHVGNKDDVTAMKKVGCCSL*

Protein Length: 219

Fln nts: ATGGGGGGTTATTTGCACATCAGAAAACCAATTCACCTGTCAACCTAAACCTACACCTCAACAAACTTACACTGATTGAGACATATCCAGACAGACATGTGACGTTTTCTTTGGGGTTGGGCCCTCTCCACCGTGGCCTGCCTTCCCAAATTGTACAATCATTTTAAACCCAACATCCTACAAATAGGATCATTTGGAGCCTCATTTCACTCGGTTTTTCTCTCAGTTTGAAGCGGTGGAGAAATGGTCTGTAGGCAAACTAACCTTTTCTGAAGAGCAGGCCTTAGAATTGTAGGGTAATTTGCAGGGGACAAA_-_ATGGCTTACAGAGCAGATGATGACTATGATTATCTCTTCAAGGTGGTACTGATTGGGGACTCTGGTGTGGGCAAGTCCAATCTGCTGTCGAGATTTACTAGGAACGAGTTCAGTTTGGAGTCCAAATCCACCATCGGAGTCGAGTTCGCGACTCGGAGTATAACAGTCGATGATAAGGTCATAAAAGCTCAGATTTGGGACACAGCTGGTCAAGAAAGATACCGGGCCATAACAAGTGCATATTATCGAGGAGCAGTTGGTGCACTGTTAGTTTATGATGTAACCAGACATGTAACCTTTGAGAACGTGGAGAGATGGCTTAAGGAGCTTAGAGACCACACTGATGCCAATATTGTGATAATGCTTGTTGGTAACAAGGCTGATTTGCGCCATCTTAGAGCTGTTTCTATAGAGGATGGCAAAGCATTTGCAGAACGAGAAAATACATATTTTATGGAAACATCAGCTTTGGAATCAACAAATGTTGAGAATGCATTCACAGAAGTACTTAGCCAGATTTACCGGATTGTGAGTAAGAAAGCTCTTGATGTTGGGGAAGACCCAGCAGCGGTGCCCAGTAAAGGACAGACGATACATGTTGGCAATAAGGATGATGTGACAGCAATGAAGAAAGTTGGGTGTTGTTCTTTATAA___GCCCAAAGTGCAGTGCTCTAAAGTGTTGTCGTCTGAAGCTTTTGCTTCTAAAGCGACTCTTTTTGAGGAATTGATTTAAATGTCAAAAGAAGGATTGATGGTTGCCTGTCAGTTTTAAGAGACAAGCACCCTGCTATTGCTCTGTATGATTTATTAGTGAACCTTTGCTGCTCTTGGATGCCTCCAAAGCGCATTGTTGTCATATAGCTTTTGTTGCTACTATACGTTTTAGCAAATATTTCAATGATTTGTATTGTGGTTATTTTGGACAGATCATGTCAAATATTTTGGGTTAATTGTATCTGTAAAGATTGAGCTGGCAAATGCAGTTCAATTTTGGTCGTTATCCTAATTATTCAAACCATTATTTCTC

Fln Alignment:

sp_v1.1_unigene26179___MAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSITVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNKADLRHLRAVSIEDGKAFAERENTYFMETSALESTNVENAFTEVLSQIYRIVSKKALDVGEDPAAVPSKGQTIHVGNKDDVTAMKKVGCC
A9NZD1_______________MAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSITVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNKADLRHLRAVSIEDGKAFAERENTYFMETSALESTNVENAFTEVLSQIYRIVSKKALDVGEDPAAVPSKGQTIHVGNKDDVTAMKKVGCC

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
168	75			25	0.996473
169	75		25		0.996473
170		75	25		0.996473
171		75	25		0.996473
172		75	25		0.996473
284	28	71			1.0
588		11		88	0.923564
613	90	10			0.90298
667		15		84	0.999986
668	84		15		0.999986
670		15		84	0.999986
675		15		84	0.999986
676	84	15			0.999986
677	84			15	0.999986
683	14		85		0.999981
684		14		85	0.999981
686		14	85		0.999981
687	14		78	7	0.999974

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain