SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26178

Length: 540 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene26178
ATGGGGAAGGGACAAACATTTGCCGCTGTTGCATCTACTGACTTTGAATCAGGGATATCATGGGGTTTGGCTAATTCGTTCAGGCCATATAACAAGTTGACACTTTTCTCAAGGTTCACAAGTGATGACTACTCAGGAAAGCGACTGATATTGCAGGCAGTTCAAATATTGAATGACAGAAATGCATTGTCACCTCTTTGTGCTGTAGCATTTGGAAGCCAACCTCAAGCTGGCATTTGTTGGACACATCAATTTAACAGTTGGACAAATGACTCTTTCCAAGCCAAAGCCTTATATAATAAAGAAGGTTCTTTTGCAATAAATGTTAAAGCTCAAGTGGGTGAGATTTGATGATCATATTTGTAAATAAGGGCATGTGTGGGGAATTAATGCCCCGCCCACAAGTATTGTTAAGAGTTTATTATCACTATATGAAATATGTCTTTTACAAGACATTATTTCATTCACAATTCCTTTTGCATGTATTCATTGATGGGGTGATCAGAATATAATGAATGTGCTCATTAGAGATCAAATAAC

Ace file of the UniGene sp_v1.1_unigene26178

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	42%
Blast2go	predicted protein [Physcomitrella patens subsp. patens]	-	-	5.31281e-20	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9RVW9

Fln msg: your sequence is shorter than subject: 117 - 460

Fln protein: MGKGQTFAAVASTDFESGISWGLANSFRPYNKLTLFSRFTSDDYSGKRLILQAVQILNDRNALSPLCAVAFGSQPQAGICWTHQFNSWTNDSFQAKALYNKEGSFAINVKAQVGEI*

Protein Length: 118

Fln nts: ATGGGGAAGGGACAAACATTTGCCGCTGTTGCATCTACTGACTTTGAATCAGGGATATCATGGGGTTTGGCTAATTCGTTCAGGCCATATAACAAGTTGACACTTTTCTCAAGGTTCACAAGTGATGACTACTCAGGAAAGCGACTGATATTGCAGGCAGTTCAAATATTGAATGACAGAAATGCATTGTCACCTCTTTGTGCTGTAGCATTTGGAAGCCAACCTCAAGCTGGCATTTGTTGGACACATCAATTTAACAGTTGGACAAATGACTCTTTCCAAGCCAAAGCCTTATATAATAAAGAAGGTTCTTTTGCAATAAATGTTAAAGCTCAAGTGGGTGAGATTTGA___TGATCATATTTGTAAATAAGGGCATGTGTGGGGAATTAATGCCCCGCCCACAAGTATTGTTAAGAGTTTATTATCACTATATGAAATATGTCTTTTACAAGACATTATTTCATTCACAATTCCTTTTGCATGTATTCATTGATGGGGTGATCAGAATATAATGAATGTGCTCATTAGAGATCAAATAAC

Fln Alignment:

sp_v1.1_unigene26178___TFAAVASTDFESGISWGLANSFRPYNKLTLFSRFTSDDYSGKRLILQAVQILNDRNALSPLCAVAFGSQPQAGICWTHQFNSW--TNDSFQAKALYNKEGSFAINVKAQVGEI
A9RVW9_______________SLSTVVSSDLRAKLSWGLSTCHNVNEKVVLFSRYNNDAYAGQRIILQAVNKVDKRNTISPICAITLGSITQGGLSWTRSFSQHGEGEESLQLKALCSSNGSYVVSVKAQLGEI

SNPs (tot: 3)

Position	A %	G %	T %	Probability
170	80	20		0.995493
171		20	80	0.995493
172		20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain