SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26176

Length: 1044 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26176

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NFC901; nucleosome/chromatin assembly factor group; K10752 histone-binding protein RBBP4	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	nucleosome chromatin assembly factor group	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	trichome differentiation	GO:0010026	Biological Process	90%
Blast2go	positive regulation of cell cycle	GO:0045787	Biological Process	90%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	90%
Blast2go	regulation of flower development	GO:0009909	Biological Process	90%
Blast2go	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	90%
Blast2go	seed coat development	GO:0010214	Biological Process	90%
Blast2go	pollen development	GO:0009555	Biological Process	90%
Blast2go	heterochromatin assembly	GO:0031507	Biological Process	90%
Blast2go	cell proliferation	GO:0008283	Biological Process	90%
Blast2go	protein binding	GO:0005515	Molecular Function	90%
Blast2go	chromatin remodeling complex	GO:0016585	Cellular Component	90%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS29

Fln msg: your sequence is shorter than subject: 209 - 421

Fln protein: NRVLEAQQIFKVHEGVVEDVAWHLRHEYLFGSVGDDRHLLIWDLRTSATNKPLHSVVAHQGEVNCLAFNPFNEWVLATGSADRTVKLFDLRKISSALHTFSCHKEEVFQIGWSPKNETILASCSADRRLMVWDLSRIDDEQTAEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENVYHGEGDMASKETL*

Protein Length: 210

Fln nts: AAAACAGAGTGCTTGAGGCCCAACAAATATTTAAGGTGCACGAGGGTGTTGTAGAAGATGTTGCATGGCATTTAAGGCATGAGTACCTTTTTGGGTCTGTCGGAGATGACCGCCATTTGTTGATATGGGATTTGCGTACATCTGCAACTAATAAACCACTGCATTCAGTAGTAGCTCATCAAGGTGAGGTTAACTGTCTTGCATTCAATCCTTTCAATGAGTGGGTACTGGCTACAGGATCCGCAGACAGAACGGTGAAACTTTTTGATCTGCGCAAGATATCCAGTGCTTTGCATACCTTTTCCTGTCACAAGGAGGAGGTTTTCCAAATAGGCTGGAGCCCCAAAAATGAAACAATATTGGCTTCTTGTAGTGCAGACAGAAGGCTTATGGTGTGGGACCTCAGCAGGATTGACGATGAGCAAACAGCAGAGGATGCAGAAGATGGACCACCTGAGTTGCTGTTTATTCATGGTGGACATACTAGTAAGATATCAGATTTCTCATGGAACCCGTGTGAGGATTGGGTTATAGCTAGTGTAGCTGAAGATAACATTCTCCAAATCTGGCAAATGGCTGAAAATGTATATCATGGTGAGGGGGATATGGCTTCCAAAGAAACATTGTAA___GAGCTAGCTAGAATTTGTGAAATTAAGAGGTGTATTCGCTTTCAGAGTTTCTCAACAAATGACATGGTTCTCATTCCATTTTCTTTTATATAATGAGAAGCAAAACTTGGCTTATCATCTTTTTTATTGAGAAAAGACACGTTGAAAGAGATTAAACCTTTAGCTTTTGCTGTTTTCTGCTGTATTTATGTAGTTTGCAATCTGGTGAAGATTATGCCAGGTCTGCCTTTCCTTGTAATAGGTTTTATAGACAAATTTCTAGCTGAAAGTGATGCTCACGTTCTAGGTAAGATGGGAAACATCAGAATGTAAGGGTCTCAAATGTTGTCACTATTCAATTTTCATCTATTTCTGGTCTGGTGGATTTTGCTGGTAAGATATTTGAAGATGTCCAACACTTGTTCTAAGTGTGTTG

Fln Alignment:

sp_v1.1_unigene26176___NRVLEAQQIFKVHEGVVEDVAWHLRHEYLFGSVGDDRHLLIWDLRTSATNKPLHSVVAHQGEVNCLAFNPFNEWVLATGSADRTVKLFDLRKISSALHTFSCHKEEVFQIGWSPKNETILASCSADRRLMVWDLSRIDDEQTAEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENVYHGEGDMASKETL
B8LS29_______________NKVLEAQQIFKVHEGVVEDVAWHLRHEYLFGSVGDDRHLLIWDLRTSAANKPLHSVVAHQGEVNCLAFNPFNEWVLATGSADRTVKLFDLRKITSALHTFSCHKEEVFQIGWSPKNETILASCSADRRLMVWDLSRIDDEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEEDMPPEETL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
515	33		66		0.997452
537	66			33	0.997452
555	66		33		0.997452
711		20		80	0.995493
908		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain