SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26165

Length: 1363 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26165

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF761 domain containing protein	-	-	6.0e-16	23%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	uncharacterized protein	-	-	0.0	57%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF761, plant	IPR008480	-	0.0	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMZ2

Fln msg:

Fln protein: MEALSQMWVAMVSWFTPTMLFLLLNAVIGTIVITSGMRQSNNTSNKDLRRNPSLLSRLSSFSLSRGKVEEVVEFENRAEEIGKMPDNVVLKEEKMPDNLVSEEEKMPDNVMVEEEKILVEMAEERKPKVEAKNNGASQKTQKKKIANGLGRSKSDTPPIGDLRAPPLPQKLKKSGTFESPFSHFDSQALTVLETTSEVVHTVDSDDNGPEDTEEVNAKADDFINKFKQQLKLQRLESIMRYKEMINRGK*

Protein Length: 251

Fln nts: ATGGGGAGCATTGAAGCCCCACACGCGTAGCAACAGCATTCACAGGGGTCTGGTCACGGACGACGATAAGAGGGGTGGTTCAGTGCAACTAGCTCGACACTTATGAAGGCTCGTAGTAGTTATCATAATTAATAAAAGGACGGGACGGATCGAATGTAAGGACTCAAGCTACATATACAGATATTTTTTTTGTTCTAGTTTACCAGAAGGGGAGCTGGGGGAGCTGTGGGATCTTGAAACCCAGCTGAGAAAGGGACCTTGCAGTTTGTATATTGCAGGAGAGTC_-_ATGGAAGCTCTGTCTCAAATGTGGGTTGCTATGGTAAGCTGGTTCACGCCCACAATGCTGTTTTTGTTGTTGAATGCTGTGATTGGAACCATTGTTATTACTTCTGGAATGCGTCAGAGTAATAACACCAGCAACAAGGACTTGAGAAGAAACCCATCTCTGTTATCCAGACTGAGCAGCTTTAGTTTATCTAGAGGCAAGGTTGAGGAGGTAGTTGAATTTGAAAACAGGGCAGAAGAAATAGGGAAAATGCCAGATAATGTTGTATTGAAAGAAGAGAAAATGCCGGATAATCTTGTATCAGAGGAAGAGAAAATGCCAGATAATGTTATGGTTGAAGAAGAAAAAATACTGGTGGAAATGGCAGAGGAAAGGAAACCCAAAGTGGAGGCTAAGAACAATGGGGCTTCCCAGAAAACCCAAAAGAAAAAAATAGCTAATGGGTTGGGAAGAAGCAAATCTGACACACCCCCTATTGGAGATCTCCGTGCTCCTCCTCTGCCACAGAAGCTCAAGAAATCGGGGACTTTTGAGTCCCCTTTCAGTCATTTTGACAGCCAGGCCCTTACAGTCTTGGAAACTACCTCTGAAGTTGTGCACACTGTGGATTCTGATGACAATGGCCCTGAAGATACCGAAGAAGTGAATGCCAAGGCCGACGACTTCATCAACAAGTTCAAGCAGCAGCTCAAGTTGCAGCGGCTTGAGTCCATCATGCGCTACAAGGAGATGATCAACCGGGGCAAATAG___TATGCCCAGGTGCATTGCATTGCACTGCACTGCATTTGCATTTGCCTTACAGAGTGATGTCACTTACTGTGAGTTTGCGCTTACTCTGGAGATTGTTTTCTTATCACCAGCAGCCATGACTCGCAGCAACTGTGAACCACTAGAACTCATGCCTTTGGATGCAACTATTGGTAACTGATGGAAGCTTATCTAAGTTGGTTTTAATTTTGTTTATCAGTCGTTGGTGCTTACTCTGGTCTGATATAAAATGAGGTATATAGAATCAATTGCCTACGAGTCTACAGTTCAAATTGTCCACAGTATAGGACCGAATGCATTCTACTTTTCT

Fln Alignment:

sp_v1.1_unigene26165___FVYCRRVMEALSQMWVAMVSWFTPTMLFLLLNAVIGTIVITSGMRQSNNT-SNKDXXXXXXXXXXXXXXXXXXGKXXXXXXXXXXXXXIGKMPDNVVLKEEKMPDNLVSEEEKMPDNVMVEEEKILVEMAEERKPKVEAKNNGASQKTQKKKIANGLGRSKSDTPPIGDLRAPPLPQKLKKSGTFESPFSHFDSQALTVLETTSEVVHTVDSDDNGPEDTEEVNAKADDFINKFKQQLKLQRLESIMRYKEMINRGK
A9NMZ2_______________FVYCRTVMEALSQMWVAMLSWFTPTVLFVLLNAVIGTIVVTSGMRQSNNTNANKDLRRNPSLLYRLSSFGLYRGK----------------------VEEVVEFENQEEEEEKMPDAVVVEEEKPRAKMPEERKSQVEVKTGGTSVKTQKKKISNGLGRSKSDTPPTADLHPTPLPRKLKKSGTFESPFSHFDSQALSVLEATPEVVNTVESDDNGPEDTEEVNAKADDFINKFKHQLKLQRLESIMRYKDMINRGK

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
243	66		33		0.997452
244			66	33	0.997452
249		33	66		0.997452
250	66	33			0.997452
251	66			33	0.997452
252	66			33	0.997452
256	66			33	0.997452
258	33	66			0.997452
259		33		66	0.997452
261		33	66		0.997452
262	33	66			0.997452
861	50		50		1.0
1055		18		81	1.0
1208	58		41		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain