SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26135

Length: 1536 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene26135 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc ion binding	-	-	3.0e-12	23%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	29%
Blast2go	zinc ion binding protein	-	-	9.59047e-28	43%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HPZ9

Fln msg: Distance to subject end: 1088 aas, your sequence is shorter than subject: 512 - 1620

Fln protein: SDGRTTEKDYMRGGEARFDSSKCDIDNPSSHIDLKLHNLLGHYQKDFKGVGSADISGSTEFPNNLFVRNSRNPMFGNYGSFFPAVEKSPSRLLQQKSLMPVQNYNLQKPTNNESMMKTARPVNADPPSKLCSIAKGSSSETGTREVRVVDFANRSLAANDVKVDEALSMKQGPILSNLTGEEKKKWKLRFKVNSDYVSNHKNTAIYTDLGLQPSTSPSLESSPNKSQMDLTEAESRPDLSPLSIIQIMTSYQIPGDSILSPLPKSILELLAQKNEPYKNDSTSRTEKTQLKEEPILNSCASEFRNDNQAQKPRKYTHSEISQGDTAKKVKNDAEKNSRMAKDSDSILSNISSKPLFKGSFEDNRQTISASNIGKNITKGRGLRTEESNSLAKDGDAFLSKVGQKEADIYGNTRKFSKNKKGLMLHCEKETYKKEGQDQVKGAISEIGDKDFVSDAKKTNDFNQVTKESLSNISNARNDKNVLNDGAKGTTGEDLGQVVIHKRLVQIRLMERT

Protein Length: 513

Fln nts: TCTGATGGGCGAACAACGGAGAAGGATTATATGAGGGGAGGAGAGGCTCGCTTTGATTCCTCCAAATGTGATATAGACAATCCTTCCTCACATATTGATCTTAAATTGCATAATTTACTAGGACATTATCAAAAGGATTTTAAGGGAGTTGGTTCAGCTGATATATCAGGCTCTACAGAGTTCCCTAATAATTTGTTTGTGCGGAATTCACGCAACCCCATGTTTGGAAATTATGGCTCATTTTTCCCAGCGGTAGAGAAGTCTCCTTCAAGATTGCTACAACAGAAATCTCTGATGCCAGTGCAGAACTACAACTTGCAAAAGCCCACAAACAATGAGTCTATGATGAAGACTGCTAGACCAGTAAATGCTGATCCACCTTCGAAGTTATGTTCAATTGCAAAGGGAAGTTCATCTGAAACAGGAACCAGAGAAGTGAGAGTAGTTGATTTTGCAAATAGAAGTTTGGCTGCGAATGATGTGAAGGTTGATGAAGCACTTTCCATGAAACAAGGGCCAATACTTAGTAATTTGACTGGTGAAGAAAAGAAGAAATGGAAATTGCGTTTTAAAGTGAATTCTGACTATGTTTCCAACCACAAAAATACTGCAATTTACACTGACTTAGGGCTTCAGCCTTCTACTTCTCCATCACTTGAAAGTAGCCCCAATAAAAGTCAGATGGATTTGACTGAAGCAGAGAGCCGACCTGATTTGAGTCCTTTATCTATAATTCAGATTATGACATCGTATCAAATACCCGGTGATTCTATTCTTTCACCTCTTCCGAAAAGTATTTTGGAATTGTTGGCGCAAAAGAATGAACCATATAAAAATGACAGTACAAGCAGGACAGAGAAAACACAGCTGAAGGAAGAGCCTATACTAAATAGCTGTGCCTCTGAGTTTAGGAATGACAATCAAGCGCAAAAGCCAAGGAAATATACACACAGTGAAATTTCTCAAGGTGATACAGCCAAGAAAGTGAAGAATGATGCTGAGAAAAATAGTAGAATGGCTAAAGATTCAGATTCTATTTTGTCAAATATTTCATCAAAACCTCTGTTTAAAGGGTCATTTGAAGATAACAGACAAACAATAAGTGCTTCTAACATAGGAAAAAATATTACAAAGGGAAGAGGTTTAAGAACAGAGGAATCCAACAGTTTAGCAAAAGATGGTGATGCTTTTTTATCGAAAGTTGGACAGAAGGAAGCAGATATTTATGGAAATACAAGAAAATTCTCTAAGAATAAAAAGGGTCTTATGCTACACTGTGAGAAGGAAACTTATAAAAAGGAAGGGCAAGACCAAGTTAAAGGAGCAATATCGGAGATTGGTGACAAAGATTTTGTCTCTGATGCAAAAAAGACAAATGATTTCAATCAAGTGACAAAAGAAAGTTTGTCAAATATCTCCAATGCTCGTAACGACAAGAATGTTTTGAATGATGGAGCAAAGGGAACTACGGGAGAGGACCTTGGGCAAGTAGTCATTCATAAAAGGCTGGTACAAATAAGGCTTATGGAAAGGACT

Fln Alignment:

sp_v1.1_unigene26135___DSSKCDIDNPSSHIDLKLHNLLGHYQKDFKGVGSADISGSTEFPNNLFVRNSRNPMFGNYGSFFPAVEKSPSRLLQQKSLMPVQNYNLQKPTNNESMMKTARPVNADPPSKLCSIAKGSSSETG-----TREVRVVDFANRSLAANDVKVDEALSMKQGPILSNLTGEEKKKWKLRFKVNSDYVSNHKNTAIYTDLGLQPSTSPSLESSPNKSQMDLTEAESRPDLSPLSIIQIMTSYQIPGDSILSPLPKSILELLAQKNEPYKNDSTSRTEKTQLKEEPILNSCASEFRNDNQAQKPRKYTHSEIS------QGDTAKKVKNDAEKNSRMAKDSD-----SILSNISSKPLFKGSFEDN-RQTISASNIGKNITKG
F6HPZ9_______________DGASIDPDVALSYIDEKLQDVLGHFQKDFEGGVSAENLGAK---------------FGGYGSFLPTYQRSPV-WSQPRTPAKVQNCNTPRSPNN-LLVEGGRHSSAVSSSAPSSVKLGATSASAGALPALKATSMSDSVKRDAYIASTRAEEFTSRESANKSANQP--DQKTLKVRIKVGSDNLSARKNAEIYSGLGLDGSPSSSLENSLSESDELSRDPQDGPDESPTSILQIMTSFPLLGDLLLSPLPDDLIH-LTEKERLFRDTKSGPVHKS--SRESLVMFGSDSVRSDGKVSGEKKTKSVEKSSFSVDMKNGSSKEGQNGVGVIPKKEMDFDVLACEELVSNALKLPLLSNAFGDSTKGTGRASDILRESNKG

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
757		25		75	0.996473
784	75	25			0.996473
785		25		75	0.996473
943	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain