SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26132

Length: 1745 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26132

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nodulin family protein	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	nodulin family protein	-	-	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nodulin-like	IPR010658	-	0.0	68%
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	0.0	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: your sequence is shorter than subject: 489 - 626

Fln protein: FLCMGGNSTTWMNTAVLVTCMRNFRRNRGPVVGILKGYIGLSTAIFTDLCTALFASSPSSFVLMLTLIPGIVCVTSMIFLRPVPCSADEREEKEEAQSFSTFNVIAIIVAVYLLVFDITGNHGIVLSRIFAGFLLVLLAAPLVVPLKIFILKRYSRGEQLIPSFWKWNSASRQSQDIEKPQLREPLLTNMVKAEGAENPEISVQAKAESRSTELQPSQGQSTENQIVSNPTPPRIGEDHTIFQAIQKFDFWLLFFAFLCGVGTGMAVINNMGQIGLAMGYVDVSMFVSLISIWGFFGRIGAGSISEHFIRKAGIPRPVWMAASQLFMIVGYIFMAIGMSGSLYLGSVVVGVCYGVRLSISVPTASELFGLKYYGMIYNFLILNLPIGSFLFSGLLAGILYDIEAAKSRKMNASPLHGLFSGTYLSGPDNGNNCVGAHCYRLVFLVMAGVCLLGFGLDVLLSFRTRNLYSNIHRSKKARESQKLRDQKV*

Protein Length: 490

Fln nts: TTTTTTGTGCATGGGAGGTAACAGCACCACCTGGATGAACACGGCGGTGCTTGTGACGTGCATGAGGAATTTCCGCAGGAACAGGGGGCCTGTTGTTGGAATACTCAAGGGTTACATCGGTCTCAGCACCGCCATTTTCACCGACCTCTGTACCGCCCTCTTCGCTAGCAGTCCATCGTCTTTCGTGCTCATGCTCACCCTTATCCCGGGCATCGTGTGTGTGACTTCCATGATATTTCTGCGCCCTGTTCCTTGTTCCGCCGACGAAAGAGAAGAAAAAGAAGAAGCTCAGAGCTTCTCTACATTCAATGTCATAGCAATCATCGTGGCCGTTTATTTGCTTGTCTTTGACATCACTGGTAATCACGGAATCGTGCTCTCACGCATTTTTGCAGGCTTCTTGCTCGTTCTTCTCGCAGCGCCTCTGGTCGTTCCTCTAAAGATTTTCATTCTAAAAAGGTATTCTAGAGGCGAGCAACTGATTCCATCTTTCTGGAAATGGAATTCCGCGAGCAGGCAATCGCAAGATATAGAAAAACCACAACTCAGAGAACCCTTATTAACGAACATGGTGAAAGCAGAGGGGGCAGAAAACCCTGAAATATCTGTGCAGGCTAAAGCTGAAAGCCGTTCTACCGAACTACAGCCTTCACAAGGCCAAAGCACTGAGAACCAGATTGTATCCAATCCTACCCCTCCTCGTATAGGCGAGGATCACACTATATTTCAGGCGATACAGAAGTTCGACTTCTGGTTATTATTTTTCGCCTTTCTTTGTGGTGTGGGGACGGGCATGGCGGTCATCAATAATATGGGCCAGATTGGTCTTGCCATGGGCTACGTTGATGTGTCCATGTTTGTTTCTTTAATTAGTATCTGGGGATTCTTTGGAAGGATTGGAGCAGGGTCCATCTCCGAACATTTTATAAGGAAGGCGGGCATTCCGAGACCTGTATGGATGGCAGCCTCGCAACTATTTATGATTGTAGGATACATATTTATGGCCATCGGTATGTCAGGGTCGCTGTACCTTGGGTCCGTTGTAGTGGGGGTCTGTTACGGTGTTCGTCTCTCTATTTCTGTTCCCACTGCATCGGAGCTTTTTGGATTGAAGTATTATGGCATGATTTATAATTTTCTCATCCTCAACTTGCCCATTGGCTCTTTCCTCTTCTCTGGCCTATTGGCTGGAATTTTGTACGATATTGAGGCGGCCAAGAGCCGTAAGATGAATGCAAGCCCGCTCCATGGTCTTTTCAGTGGCACTTACCTGTCAGGGCCGGACAACGGCAATAACTGTGTAGGTGCCCATTGCTACAGATTGGTCTTCTTGGTGATGGCCGGAGTTTGTCTTCTGGGTTTCGGCTTGGATGTTCTTTTGAGCTTCCGGACTAGAAATTTGTATTCAAATATACACAGATCTAAAAAGGCCAGAGAATCGCAGAAGCTCAGGGACCAGAAAGTCTGA___GTCTAGAATGTCTTCTGCTGCAAATTCACCGTGGCTTAGTAACCACCCAGGATGGAAGTTCTTTGGTGCTTGCTGTCAGCAATCATGATAGTTACTAGGAGCTGTCAATCAGTTTCCCTTTCAATTTTTCTAACTAGATTAGGCTCTGGGCTTCCTGTCAACAATTTCTATGAAAAATTGCAATAAAAAACCTGTAACCACGAGTTGTAGAAACGGATGTGATCATTTTGAAATATGGTATTAATCTCTTGAGTTTGTTATTCTCATTCTCAATTTT

Fln Alignment:

sp_v1.1_unigene26132___FLCMGGNSTTWMNTAVLVTCMRNFRRNRGPVVGILKGYIGLSTAIFTDLCTALFASSPSSFVLMLTLIPGIVCVTSMIFLRPVPCSADEREEKEEAQSFSTFNXXXXXXXXYLLVFDITGNHGIVLSRIFAGFXXXXXXXXXXXXXKIFILKRYSRGEQLIPSFWKWNSASRQSQDIEKPQLREPLLTNMVKAEGAENPEISVQAKA------------------------ESRSTELQPSQGQSTENQIVSNPTPPRIGEDHTIFQAIQKFDFWLLFFAFLCGVGTGMAVINNMGQIGLAMGYVDVSMFVSLISIWGFFGRIGAGSISEHFIRKAGIPRPVWMAASQLFMIVGYIFMAIGMXXXXXXXXXXXXXXXXXXXXISVPTASELFGLKYYGMIYNFLILNLPIGSFLFSGLLAGILYDIEAAKSRKMNASPLHGLFSGTYLSGPDNGNNCVGAHCYRLVFLVMAGVCLLGFGLDVLLSFRTRNLYSNIHRSKKARESQKLRDQKV
B8LRH5_______________FLCMGGNSTTWMNTAVLVTCMRNFRRNRGPVVGILKGYIGLSTAIFTDLCSALFASSPSSFVLMLTLIPGIVCVTSMIFLRPVPCSADEREEKEEAQSFSTFNVIAITVAVYLLAFDITGKHGIVLSRTFAGFLLVLLAAPLVVPLKLFIKEKNSRGEQLIPSFWKWKSANTQFLDIEK-QVREPLLTNVEEAKGAENPETSVQAKAESIATEPRPSQSESVATEPWPSQSESVTTEPRPSQSESVENQIVCN-SKPRIGEDHTIFQAIQKFDFWLLFFAFLCGVGTGMAVINNMGQIGLAMGFVDVSMFVSLISIWGFFGRIGAGSISEHFIRKAGVPRPVWMAASQLFMIVGYIFMAIGMPGSLYLGSIVVGVCYGVRLSISVPTASELFGLKYYGMIYNFLILNLPIGSFLFSGLLAGILYDIEAAKSHKVNARPYPVLLSGIYPSELEDSNNCVGAHCYRLVFLVMAGVCLLGFGLDVLLSFRTRNLYSNIHRSRKARESQKIKGQKV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1267	15			84	1.0
1550	88		11		0.923564
1575	66	16			0.988813
1576	80	20			0.995493
1578	20	80			0.995493
1659		75	25		0.996473
1732		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain