SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26123

Length: 1212 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26123

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase (Fragment) n=1 Tax=Vitis vinifera RepID=D7SXF6_VITVI	-	-	66%
FL-Next	sp=Pectinesterase 31; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Blast2go	pectinesterase family protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pectinesterase.	EC:3.1.1.11	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	73%
Blast2go	Starch and sucrose metabolism	00500	73%
Blast2go	Metabolic pathways	01100	73%

Source	GOs	Term	Type	Identity
Blast2go	pectin metabolic process	GO:0045488	Biological Process	73%
Blast2go	pectinesterase activity	GO:0030599	Molecular Function	73%
Blast2go	cytoplasm	GO:0005737	Cellular Component	73%
Blast2go	cell wall	GO:0005618	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Blast2go	Pectinesterase, catalytic	IPR000070	-	73%
Blast2go	Pectin lyase fold/virulence factor	IPR011050	-	73%
Blast2go	Pectin lyase fold	IPR012334	-	73%
Blast2go	Pectinesterase, active site	IPR018040	-	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LVQ0

Fln msg:

Fln protein: MAVTKVVAQDGSAEYKDVQAAINAVPVGNKQRVVIEVKSGVYRQPLYIPKTKNLITLRGSSSAEETVLTWDNTANKPIKHHQDQSVIGTGTFACGSVIVEGSDFIAEGITFENSAPQGSGQAVAIRVTGDRCAFYTCRFLGWQDTAYLHHGKHYLRDCYIEGSVDFIFGDATALLEHCHIHCKAAGFVTAQGRRSRDVPTAYVFLRCVITGNGQRNYAYLGRPWQPFARVVYAYTWMDACIKPEGWHNWDSQEKEGTASFYEYKCFGPGSNTSGRVKWARQLNDGEIAQYVSQTFIDPPDKKSWLVNKMSMKLPVTA*

Protein Length: 319

Fln nts: ATGGGGGCAAAGCTCGGTAGTGTGTTTCAAGATTAATTGAATCTTACAGTACCTAAAGCTGCAGTT_-_ATGGCTGTTACAAAGGTAGTTGCTCAGGATGGTAGCGCCGAGTACAAGGATGTCCAAGCTGCCATTAACGCTGTCCCTGTTGGCAACAAGCAACGAGTAGTAATCGAGGTTAAGTCTGGAGTTTACAGGCAACCCCTCTATATTCCCAAAACGAAGAATCTCATCACACTCCGAGGATCCTCTAGTGCAGAAGAAACTGTTTTAACATGGGACAACACAGCCAATAAGCCCATTAAACATCATCAGGATCAGAGCGTGATCGGCACTGGTACGTTTGCCTGCGGCTCTGTGATTGTAGAAGGATCGGATTTCATTGCTGAGGGGATTACATTTGAAAACTCAGCGCCTCAGGGATCGGGGCAAGCTGTTGCTATCAGAGTAACAGGAGACAGATGTGCATTCTACACTTGCAGATTTCTCGGCTGGCAGGACACTGCGTATCTACACCATGGAAAGCACTACCTGAGAGATTGCTACATCGAAGGCAGCGTCGACTTCATCTTTGGAGATGCAACGGCATTGTTAGAACACTGCCACATTCACTGCAAGGCTGCAGGGTTTGTCACCGCACAGGGCCGTAGATCTCGGGATGTTCCAACGGCTTATGTGTTTCTCAGGTGTGTTATTACTGGTAACGGGCAGCGCAATTATGCATATCTGGGGCGCCCATGGCAGCCATTCGCCAGAGTTGTATACGCTTACACGTGGATGGATGCTTGCATCAAGCCAGAGGGTTGGCATAACTGGGATTCGCAGGAGAAAGAAGGGACTGCATCCTTCTATGAATACAAGTGTTTTGGGCCAGGAAGTAATACGTCTGGGCGAGTGAAGTGGGCTAGGCAACTGAACGATGGTGAGATTGCTCAGTATGTAAGTCAGACTTTCATCGACCCACCCGATAAGAAATCGTGGCTGGTAAACAAGATGTCAATGAAATTACCAGTAACAGCCTAG___CGAAACTATGAGGCTATCCCCGTTGAGGGGAGGGATCCTCCTATCCGCAGAATTATTGTTCCAGGTTAAGTAGAGTGTTACTGTGCTTTCGTCTAGAGTGTGATCTCGTTTTTCGATAATAATGTCCCTGGACATAAAAGAAAAAAGGTTTTAAGACAGGTTTATTTGAAAGAAAATAAATATTTTGGTAGC

Fln Alignment:

sp_v1.1_unigene26123___QDGSAEYKDVQAAINAVPVGNKQRVVIEVKSGVYRQPLYIPKTKNLITLRGSSSAEETVLTWDNTANKPIKHHQDQSVIGTGTFACGSVIVEGSDFIAEGITFENSAPQGSGQAVAIRVTGDRCAFYTCRFLGWQDTAYLHHGKHYLRDCYIEGSVDFIFGDATALLEHCHIHCKAAGFVTAQGRRSRDVPTAYVFLRCVITGNGQRNYAYLGRPWQPFARVVYAYTWMDACIKPEGWHNWDSQEKEGTASFYEYKCFGPGSNTSGRVKWARQLNDGEIAQYVSQTFIDPPDKKSWLVNKMSMKLPVTA
Q9LVQ0_______________QDGSGDYCSVQDAIDSVPLGNTCRTVIRLSPGIYRQPVYVPKRKNFITFAGISP-EITVLTWNNTASK-IEHHQASRVIGTGTFGCGSVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSQGFITAQSRKSSQESTGYVFLRCVITGNGQSGYMYLGRPWGPFGRVVLAYTYMDACIRNVGWHNWGNAENERSACFYEYRCFGPGSCSSERVPWSRELMDDEAGHFVHHSFVDPEQDRPWLCLRMGVKTPYSA

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
698	20		80		0.995493
700	80		20		0.995493
701	80		20		0.995493
702		80	20		0.995493
708	75		25		0.996473
875	10		90		0.90298
1036	66		33		1.0
1039	50	50			1.0
1040		83		16	0.994512
1072	30		70		1.0
1113		60		40	1.0
1158	37	62			1.0
1159	57	42			1.0
1162	50		50		1.0
1165	50	50			1.0
1185		25		75	0.996473
1194			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain