SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26121

Length: 1531 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26121

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Proliferating cell nuclear antigen n=16 Tax=Spermatophyta RepID=PCNA_CATRO	-	-	87%
FL-Next	sp=Proliferating cell nuclear antigen; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	proliferating cell nuclear antigen	-	-	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P175

Fln msg:

Fln protein: MLELRLVQGSLLKKVLEAIKDLVTDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNLSMGMNINNMSKMLKCAGNDDIITIKADDGGDTVTFMFESPNQDKISDFEMKLMDIDTEHLGIPESEYQAIVRMPSPEFARICKDLSTIGDTVVISVTKEGVKFSTRGDIGSANIVCRQNTSVDKPEEATLIEMQEPVSLTFALRYMNSFTKASPLSNIVTISMSSDLPVVVEYKIADMGYVRYYLAPKIEEDGGES*

Protein Length: 264

Fln nts: ATGGGGAATGCCCACTCGCTGCAATTACCCGCCCTCCTGTTCTTCTTCATAGTATACCCTCGATATGCTGCAGCCCTACACACAGAGTCCCACCTGCACCTTAAAAAAACCCTAAGAACTCTCGAAGTCCAGAAAAACGCTCATATCCACTGCCATTAAAAAAGCCAATACCCTCGAACCTCCAAAATCACACGTTTCGACCTCACAATTTCACATCCTATTTCATAGGTGCAGAGGACTCTGCTGACTCTCTCATTTTCTTCGATACCCGTTTGTTCGTTTTCTTCGATACACGTTTGTTCATTTTCTTTTCGCC_-_ATGTTGGAGCTAAGGCTTGTGCAGGGGAGCCTGCTGAAAAAAGTGCTTGAAGCCATTAAGGATTTAGTTACGGATGCCAATTTCGACTGCTCGGCAACGGGGTTTTCTCTGCAGGCCATGGATTCCAGTCATGTGGCCCTCGTGGCCCTTCTGCTAAGGTCGGAGGGTTTCGAGCATTACAGATGCGATAGAAATCTGTCGATGGGGATGAATATCAATAACATGTCCAAGATGTTGAAATGCGCTGGGAATGATGATATTATCACCATTAAAGCCGATGATGGAGGAGATACTGTCACCTTCATGTTTGAAAGCCCCAACCAGGATAAGATTTCAGATTTTGAAATGAAGTTGATGGATATTGACACTGAGCATTTGGGTATCCCCGAGTCTGAGTACCAAGCCATTGTAAGGATGCCATCACCAGAGTTTGCTCGTATTTGCAAAGATCTTAGCACTATTGGTGACACAGTTGTCATTTCGGTCACCAAGGAAGGAGTAAAGTTTTCTACCAGAGGCGATATTGGAAGTGCAAACATTGTCTGTAGGCAAAATACTTCTGTTGACAAGCCTGAGGAGGCAACATTGATTGAAATGCAGGAGCCTGTGTCATTAACATTTGCTCTACGATATATGAACTCATTTACAAAGGCATCGCCTCTATCTAACATAGTGACGATAAGCATGTCATCCGATCTGCCTGTTGTTGTTGAATACAAAATTGCAGATATGGGATACGTTCGGTATTATTTGGCCCCCAAGATTGAGGAGGATGGAGGAGAATCTTAA___GTTTACTATGCAGTGCTGGCCCACTTTTTCTTGTAAGGTTTTGGGATGCATGATTGCTCAGTTTGCTGCAGTCATCTATATGATGGGGTTGTATGAATTGAAGCATTCCAGATACTTCTATCTATTTCTTCTATACATTTGGTATAGTGGGGCTATTAAGTATCCTTGTCTGTGTAGTTAATTTTGCATTTCCCGGAGAAAATAAGGACTTTATGCTGTATTTACCAGGAATAAACAGTTCATGGTTGTTGACTATGCCTGATTCCTATTTCGTTGGTACATTGGATTTTATCTTGAAAGCTTGTGGGCTTCATATGTACTTTACAAAGTTATGAACTCATGCCAATTTACCCAACAAACTTTAATCTGTTGAAGGCATTGTTGGTGACAGAGTAGTGAATATGAAAAATGGATCAAAGGATTTTG

Fln Alignment:

sp_v1.1_unigene26121___MLELRLVQGSLLKKVLEAIKDLVTDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNLSMGMNINNMSKMLKCAGNDDIITIKADDGGDTVTFMFESPNQDKISDFEMKLMDIDTEHLGIPESEYQAIVRMPSPEFARICKDLSTIGDTVVISVTKEGVKFSTRGDIGSANIVCRQNTSVDKPEEATLIEMQEPVSLTFALRYMNSFTKASPLSNIVTISMSSDLPVVVEYKIADMGYVRYYLAPKIEEDG
A9P175_______________MLELRLVQGSLLKKVLESIKDLVTDANFDCSATGFSLQAMDSSHVALVSLLLRSEGFEHYRCDRNMSMGMNLNNMAKMLKCAGNDDIITIKADDGGDTVTFMFESPNQDKISDFEMKLMDIDSEHLGIPESEYHAIVRMPSQEFARICKDLSSIVDTVVISVSKEGVKFSTRGDIGSANIVCRQNPSVDKPDEATIIEMQEPVSLTFALRYMNSFTKATPLSNTVTISMSSELPVVVEYKIADMGYIRFYLAPKIEEEG

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
156			11	88	0.923564
175		90		10	0.90298
1148	90			10	0.90298
1289	87		12		1.0
1332	89	10			1.0
1433		52		47	1.0
1506			33	66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain