SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26107

Length: 2412 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene26107
TTGCACTAATTCAATATGAAGATATGCTTTCTTTTGAGGTCGACAAGTCGATGCACCTACCCTTAACCTGCGATTGCTCAATATTTCCCATCTCCCAAGGACGAGTGAGAAGGTTGTATATCTCCCATGAGAAGAAGGTTGTTGGAGCTCCAGTGCATGCACCTAACTTTAACCTGCGATTCCCGAATGTTTCCTATTGTCCAGGAGGAGTGAGAAGGTTGTATATCTCCCAGAACTTAGAAGGAGAAGGTTGTTCGAGCTCCAGTGCAACAACGATGACAATAGCCAGGAGATTTTCTTCACTTATAGTGCGAGGAGTGCGGTCTGCTGGTTCCCGTTCATCTGCTGTTGGATTGCCAGCTCTATCAAAACAAGCATCTGCAAAGAATTCCAGAATTCAGAGATTTGGAACCGCTGCAAGTGCTTTAGAGGAACCTATAGCACCACCTGTCCAAGTGAAGTACACGCATCTTCTTATTGATGGACAATTCGTTAATGCAGCTTCTGGAAAAACATTTCCAACCTTTGATCCCAGAACAGGGGATTTGATTGCTGATGTGGCTGAAGGCGATGCAGAAGATGTGGACAGAGCTGTAAAGGCTGCACGAAAAGCCTTTGATGAAGGCCCATGGCCAAAAATGACTGCTTATGAAAGATCGTGTATTATGTACCGGTTTGCTGACTTGCTTGAAAAGCATAATGATGAGATTGCAGCTCTGGAAACATGGGACAATGGGAAGCCTTATGAGCAATCATCCTTGGTCGAAGTGCCAATGGCAATACGGGTATTTCGTTACTATGCAGGTTGGGCAGATAAAATACATGGCCTTACAATTCCAGCTGATGGACCTTATCATGTTCAAACTTTACATGAACCTATTGGAGTTGCAGGTCAAATCATTCCTTGGAATTTTCCATTGCTTTTGTTTTCTTGGAAAGTGGCTCCAGCACTAGCTTGTGGGAACACTATTGTATTAAAGAGTGCTGAGCAGACATCATTAACAGCTATTTATGCAGCAAAGCTTTTCCATGAGGCTGGACTGCCTTCAGGAGTCCTGAATATCATTCCAGGATATGGTCGAACTGCAGGAGTTGCAATTGCAAAACACATGGATATTGATAAGCTTGCCTTCACAGGATCAACCGAAACTGGTAAAGCAGTACTAGAGTTAGCTTCTAAGAGCAACCTTAAGCGAGTGACATTGGAACTTGGAGGGAAGTCTCCATTTATCGTATGTGAAGATGCTGATGTTGACCAGGCTGTTGAGCTTGCACACACTGCTCTATTTTTCAACCAGGGTCAATGCTGCTGTGCTGCATCACGAACCTATGTACATGAGAGTATCCATGATGAATTTGTAGAAAAGGCAAAAGCACGGTGTTTAAGTCGTGTTGTTGGTGATCCCTTTAAAAAAGGTGTTGAACAAGGTCCTCAGATTGACCAGATGCAGTTTAACAAAATTATGAGTTATATTAAGGCTGGGAAAGAGAGTGGTGCAAAACTTGTAACAGGGGGAGAGCAAATTGGTACCAAGGGCTTCTACATTATGCCCACAGTTTTCTCAGAAGTTCAGGATGACATGCCCATTGCCACTGAAGAAATATTTGGCCCTATACAATCAATTATGAAATTCAAAGATTTAGACGAAGTAATAAAGCGGGCTAATGGTTCTCATTATGGCTTGGCAGCGGGAGTCTTTACAAAGAGTATAGATACCGCAAACACCCTCACTCGTGCGTTACGTGCAGGATCAATCTGGATTAATTGCTTTCACGTTTTTGATGCCGGTGTACCTTTTGGTGGCTATAAAATGAGTGGCACTGGAAGACAAAAGGGAATGTATGGTCTCCAAAGTTACTTACAGGTTAAAGCCGTTGTGTCTCCTTTGAAGAATCCAGCATGGTTGTAGGCTGTTACGTGCCTTCTAATATATTTGATGTATGCAGAACATATCTAATCCCTTGTGCTATTGTCAAGTCAGTCTACTTTGAAATAAACTTTCTATTACTAGAAACGTGTTACCTTCAGAGGGGTGGGATGGTTTGTTTAGCTGGGCATCCTATAGTAACGTCTCTGTAAAACTGTGTAGATTCAAACGTTAGAACTCTGTTTAGCTGTGCATCCTAGAGTAACGTCTCTGAATACGGTGTAGATTCAGACGTTAGAACTCGATTATCTTGTCCATATAAAATGTGAAATAATAACGTCTCTGTAGTACGGTGTAGATTCAGACGTTAGAACTCAATTATCTTGTCCATATAAAATGTGAAATAAAGGTTGCCACGGTTTTTGGAACTTTCATGGTTTCTACACTGACGGGCAATCATTGTTTGAACTTTGGCTTTCCACTAGTGTTGAGTAAATCGAGTTGTTTGAAATGTCAGTCTTTTATGAATTTGATTTTTTCTGGT

Ace file of the UniGene sp_v1.1_unigene26107

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aldehyde dehydrogenase (NAD+) (EC:1.2.1.3); K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	aldehyde dehydrogenase	-	-	87%

Source	ECs	Term	Type	e value	Identity
AutoFact	Aldehyde dehydrogenase (NAD(+)).	EC:1.2.1.3	-	0.0	74%

Source	KEGGs	Term	Identity
AutoFact	Glycolysis / Gluconeogenesis	00010	74%
AutoFact	Pentose and glucuronate interconversions	00040	74%
AutoFact	Ascorbate and aldarate metabolism	00053	74%
AutoFact	Fatty acid metabolism	00071	74%
AutoFact	Valine, leucine and isoleucine degradation	00280	74%
AutoFact	Lysine degradation	00310	74%
AutoFact	Arginine and proline metabolism	00330	74%
AutoFact	Histidine metabolism	00340	74%
AutoFact	Tryptophan metabolism	00380	74%
AutoFact	beta-Alanine metabolism	00410	74%
AutoFact	Glycerolipid metabolism	00561	74%
AutoFact	Pyruvate metabolism	00620	74%
AutoFact	Chloroalkane and chloroalkene degradation	00625	74%
AutoFact	Propanoate metabolism	00640	74%
AutoFact	Limonene and pinene degradation	00903	74%
AutoFact	Metabolic pathways	01100	74%
AutoFact	Biosynthesis of secondary metabolites	01110	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	0.0	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUF6

Fln msg: your sequence is longer than subject: 629 - 544

Fln protein: MLSFEVDKSMHLPLTCDCSIFPISQGRVRRLYISHEKKVVGAPVHAPNFNLRFPNVSYCPGGVRRLYISQNLEGEGCSSSSATTMTIARRFSSLIVRGVRSAGSRSSAVGLPALSKQASAKNSRIQRFGTAASALEEPIAPPVQVKYTHLLIDGQFVNAASGKTFPTFDPRTGDLIADVAEGDAEDVDRAVKAARKAFDEGPWPKMTAYERSCIMYRFADLLEKHNDEIAALETWDNGKPYEQSSLVEVPMAIRVFRYYAGWADKIHGLTIPADGPYHVQTLHEPIGVAGQIIPWNFPLLLFSWKVAPALACGNTIVLKSAEQTSLTAIYAAKLFHEAGLPSGVLNIIPGYGRTAGVAIAKHMDIDKLAFTGSTETGKAVLELASKSNLKRVTLELGGKSPFIVCEDADVDQAVELAHTALFFNQGQCCCAASRTYVHESIHDEFVEKAKARCLSRVVGDPFKKGVEQGPQIDQMQFNKIMSYIKAGKESGAKLVTGGEQIGTKGFYIMPTVFSEVQDDMPIATEEIFGPIQSIMKFKDLDEVIKRANGSHYGLAAGVFTKSIDTANTLTRALRAGSIWINCFHVFDAGVPFGGYKMSGTGRQKGMYGLQSYLQVKAVVSPLKNPAWL*

Protein Length: 630

Fln nts: TTGCACTAATTCAATATGAAGAT_-_ATGCTTTCTTTTGAGGTCGACAAGTCGATGCACCTACCCTTAACCTGCGATTGCTCAATATTTCCCATCTCCCAAGGACGAGTGAGAAGGTTGTATATCTCCCATGAGAAGAAGGTTGTTGGAGCTCCAGTGCATGCACCTAACTTTAACCTGCGATTCCCGAATGTTTCCTATTGTCCAGGAGGAGTGAGAAGGTTGTATATCTCCCAGAACTTAGAAGGAGAAGGTTGTTCGAGCTCCAGTGCAACAACGATGACAATAGCCAGGAGATTTTCTTCACTTATAGTGCGAGGAGTGCGGTCTGCTGGTTCCCGTTCATCTGCTGTTGGATTGCCAGCTCTATCAAAACAAGCATCTGCAAAGAATTCCAGAATTCAGAGATTTGGAACCGCTGCAAGTGCTTTAGAGGAACCTATAGCACCACCTGTCCAAGTGAAGTACACGCATCTTCTTATTGATGGACAATTCGTTAATGCAGCTTCTGGAAAAACATTTCCAACCTTTGATCCCAGAACAGGGGATTTGATTGCTGATGTGGCTGAAGGCGATGCAGAAGATGTGGACAGAGCTGTAAAGGCTGCACGAAAAGCCTTTGATGAAGGCCCATGGCCAAAAATGACTGCTTATGAAAGATCGTGTATTATGTACCGGTTTGCTGACTTGCTTGAAAAGCATAATGATGAGATTGCAGCTCTGGAAACATGGGACAATGGGAAGCCTTATGAGCAATCATCCTTGGTCGAAGTGCCAATGGCAATACGGGTATTTCGTTACTATGCAGGTTGGGCAGATAAAATACATGGCCTTACAATTCCAGCTGATGGACCTTATCATGTTCAAACTTTACATGAACCTATTGGAGTTGCAGGTCAAATCATTCCTTGGAATTTTCCATTGCTTTTGTTTTCTTGGAAAGTGGCTCCAGCACTAGCTTGTGGGAACACTATTGTATTAAAGAGTGCTGAGCAGACATCATTAACAGCTATTTATGCAGCAAAGCTTTTCCATGAGGCTGGACTGCCTTCAGGAGTCCTGAATATCATTCCAGGATATGGTCGAACTGCAGGAGTTGCAATTGCAAAACACATGGATATTGATAAGCTTGCCTTCACAGGATCAACCGAAACTGGTAAAGCAGTACTAGAGTTAGCTTCTAAGAGCAACCTTAAGCGAGTGACATTGGAACTTGGAGGGAAGTCTCCATTTATCGTATGTGAAGATGCTGATGTTGACCAGGCTGTTGAGCTTGCACACACTGCTCTATTTTTCAACCAGGGTCAATGCTGCTGTGCTGCATCACGAACCTATGTACATGAGAGTATCCATGATGAATTTGTAGAAAAGGCAAAAGCACGGTGTTTAAGTCGTGTTGTTGGTGATCCCTTTAAAAAAGGTGTTGAACAAGGTCCTCAGATTGACCAGATGCAGTTTAACAAAATTATGAGTTATATTAAGGCTGGGAAAGAGAGTGGTGCAAAACTTGTAACAGGGGGAGAGCAAATTGGTACCAAGGGCTTCTACATTATGCCCACAGTTTTCTCAGAAGTTCAGGATGACATGCCCATTGCCACTGAAGAAATATTTGGCCCTATACAATCAATTATGAAATTCAAAGATTTAGACGAAGTAATAAAGCGGGCTAATGGTTCTCATTATGGCTTGGCAGCGGGAGTCTTTACAAAGAGTATAGATACCGCAAACACCCTCACTCGTGCGTTACGTGCAGGATCAATCTGGATTAATTGCTTTCACGTTTTTGATGCCGGTGTACCTTTTGGTGGCTATAAAATGAGTGGCACTGGAAGACAAAAGGGAATGTATGGTCTCCAAAGTTACTTACAGGTTAAAGCCGTTGTGTCTCCTTTGAAGAATCCAGCATGGTTGTAG___GCTGTTACGTGCCTTCTAATATATTTGATGTATGCAGAACATATCTAATCCCTTGTGCTATTGTCAAGTCAGTCTACTTTGAAATAAACTTTCTATTACTAGAAACGTGTTACCTTCAGAGGGGTGGGATGGTTTGTTTAGCTGGGCATCCTATAGTAACGTCTCTGTAAAACTGTGTAGATTCAAACGTTAGAACTCTGTTTAGCTGTGCATCCTAGAGTAACGTCTCTGAATACGGTGTAGATTCAGACGTTAGAACTCGATTATCTTGTCCATATAAAATGTGAAATAATAACGTCTCTGTAGTACGGTGTAGATTCAGACGTTAGAACTCAATTATCTTGTCCATATAAAATGTGAAATAAAGGTTGCCACGGTTTTTGGAACTTTCATGGTTTCTACACTGACGGGCAATCATTGTTTGAACTTTGGCTTTCCACTAGTGTTGAGTAAATCGAGTTGTTTGAAATGTCAGTCTTTTATGAATTTGATTTTTTCTGGT

Fln Alignment:

sp_v1.1_unigene26107___MTIARRFSSLIXXXXXXXXXXXXXXXLPALSKQASAKNSRIQRFGTAASALEEPIAPPVQVKYTHLLIDGQFVNAASGKTFPTFDPRTGDLIXXXXXXXXXXXXXXXKAARKAFDEGPWPKMTAYERSCIMYRFADLLEKHNDEIAALETWDNGKPYEQSSLVEVPMAIRVFRYYAGWADKIHGLTIPADGPYHVQTLHEPIGVAGQIIPWNFPLLLFSWKVAPALACGNTIVLKSAEQTSLTAIYAAKLFHEAGLPSGVLNIIPGYGRTAGVAIAKHMDIDKLAFTGSTETGKAVLELASKSNLKRVTLELGGKSPFIVCEDADVDQAVELAHTALFFNQGQCCCAASRTYVHESIHDEFVEKAKARCLSRVVGDPFKKGVEQGPQIDQMQFNKIMSYIKAGKESGAKLVTGGEQIGTKGFYIMPTVFSEVQDDMPIATEEIFGPIQSIMKFKDLDEVIKRANGSHYGLAAGVFTKSIDTANTLTRALRAGSIWINCFHVFDAGVPFGGYKMSGTGRQKGMYGLQSYLQVKAVVSPLKNPAWL
A9NUF6_______________MAAGRGFSSLVARAVRSAGARPSAFGTSVSSHQASIRNDGIRRLGTAASALEEPIAPPVQVKHTQLLIDGQFVNAASGKTFPTFDPRTGDVIANVAEGDAPDVNRAVKAARKAFDVGPWPKMTAYERSCIMLRFADLLEKHNDEIAALETWDNGKPYEQASLVEVPMAVRLFRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNSIVLKSAEQTPLTALYAAKLFHEAGLPPGVLNIVSGFGPTAGAAIARHMDIDKVAFTGSTETGKAVLELASKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHESIHDEFVEKAKARCLSRVVGDPFRKGVEQGPQIDQEQFNKILRYIKAGKESGAKLVTGGDQIGTKGFYIMPTIFSEVQDDMAIATDEIFGPVQSIIKFKTLDEVIKRANASRYGLAAGVFTQNIETANTLTRALRVGTVWVNCFDIFDAGIPFGGYKMSGTGREKGIYSLQNYLQVKAVVTPLKNPAWL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
393		28		71	1.0
414	14	85			0.999981
468	18		81		0.999994
570		85		14	0.993533
1279	17			82	1.0
1475		11		88	0.923564
1530		12		87	0.992554
1642		16		83	0.994512
1643	16			83	0.994512
1645			83	16	0.994512
1646	83	16			0.994512
1647		83		16	0.994512
1649	83		16		0.994512
1651			83	16	0.994512
1658	80			20	0.995493
2017		42		57	1.0
2080	28	71			1.0
2104	16		83		0.994512
2186	29		70		1.0
2303	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain