SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26102

Length: 1066 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26102

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	universal stress protein (USP) family protein	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	universal stress protein family protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	79%

Source	InterPros	Term	Type	Identity
Blast2go	Universal stress protein A	IPR006015	-	79%
Blast2go	UspA	IPR006016	-	79%
Blast2go	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	79%

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
167			80	20	0.995493
168	80		20		0.995493
169	80		20		0.995493
170	80		20		0.995493
290		10		90	0.90298
469	66		33		0.997452
471			33	66	0.997452
472	50	25	25		0.995533
474			75	25	0.996473
475		25	75		0.996473
476	75		25		0.996473
477	75			25	0.996473
478	75		25		0.996473
480		25	75		0.996473
481	75	25			0.996473
483	75			25	0.996473
484	75		25		0.996473
486	75	25			0.996473
487			75	25	0.996473
489			75	25	0.996473
491		25		75	0.996473
543		75		25	0.996473
803		10		90	0.90298
839	87		12		0.992554
960	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain