SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26097

Length: 2169 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene26097
ATGGGGAGAGGGCAATTTCTGGAAATTAAAAATCTTTAGGCTGGAAGTTTCCGGATACAGAGACACCGGGTATTAAACCATCCCTGAACGATTTCTAAAGCCTTCAGTTTTCGTTAATAGTCTTCGAGGCATCCCAGTTATAATTCGGATAATTATTATAGTTAATTTATTTCTAACAGACTCGGGGCACCGGGTTTCGGAATAGAAAGACTTATTCTCTTATTCTGCTCTTGGGTTCTCATTCTTTTTCGATACCGCGGAGCAGTCCTCCTCGGTTCGAATTTCTCTAAGTGCATCAATGGCTGAGGATCTTGAGAGGCAGGCGATCGAGGCCTTTAAGGAAGACGAGTTCGAACAAGCCGTCGATTTGTATACGCAGGCCATACGCCTGGAGCCTTCCAATGCCGGGTTTTATGTTGACAGGGCCTGGGCGAACATTAAGCTCGAGAATTATACAGACGCTGTGGCTGATGCAAACCGGGCAATAGAATTGGATCCTTCTCTGGCAAAGGCATATCTCCGTAAGGGTATTGCTTGCTTTTCTCTGGAGGAATATCAAACAGCTATGGCTGCATTTAAGGCAGGATCTGTTCTTGATGACAACAACCCAAAGTTTAAGACTTGGATCGATAAATGCGATGCACGGCTAGTTGAAGAAGCTGCATCAGATGGAAAAGAATCAGAGTCTGTTCCTCCAGCAGTAGCCAATGGACCTGTTGCCCCTATATCAGATAATGGTCTTCCAAATGTAGGATCAGAGCAATTGACTTCCAGAGATAATACTAATACTAATAATAATAATCTTGGTGAACCTTTGCAACCAACTAAACCTAAATACAGACATGAATACTACCAAAAACCAAATGAAGTAGTTGTTACTGTGTTTGCAAAGGGAGTGTCTAAAGACATTGTTACTGTTGAGTTTGGCGAACAGTTCTTGAGCATTATCATTGATGTTCCAGGGGAAGACAATTATGTTCTTCAGAAGCGTTTATTTGCTAAGATAATACCAGAAAAATGTAAGTATAGCATATTGTCAACTAAAATAGAGGTGCGTTTGGCTAAGGCCGAGCCAATCAATTGGACGTCTTTGGAATACGACAAAAAGCAGGCTGTACCGCAGAAACCAAATATTTTTTCAGGGACTGAAATTCAGAGAACCACGTACCCATCGTCAAACACAAAAGCCCGTAGAGATTGGGATAAACTTGAAGCTCAAGTAAAGAAAGAGGAAAAGGATGAGAAATTGGAAGGTGATGCAGCTCTTAATAAACTTTTCCGGGATATTTACCAGGATGCAGACGAGGATACAAGGAGGGCTATGCAGAAATCCTTTATAGAGTCGAATGGCACTGTTCTCTCCACGAATTGGAAAGAAGTAGGTGCTAAGCATGTTGATGGCAGCCCCCCCCAGGGCATGGAAATGAAGAAGTGGGAAATTTAACAACTTGCATCTAAGATTTAATCAGTGTATCATGAAATCTATTCGAATTTCTGCTTGCTCTAATTTTGTAATGTGGTATATAGGTGAAATGTGGGTAGTCATATGTCATTACCGGGTGGCTAGTCCAAAGCTGGGCGAGGGAAAAGATTCTCATAATTCATTGAATGTCTCCTGAAGATTTCGAGATGTGGGCTTGTGGGCTTGCCTTGTTTGAAATTTTTTCTGTTTTGCTGTTAGCATTAACCAGATCATCTCTCGTATGACAGCAATCAGACGCTCGGACAAAACTGCAAAATTTGATAATCCAAATGTGCCTGTAAGATTTTATTGGAAATTCAGTGTCTTCCCACGCTGGTATATCACTTAATCTATGTAACATTAAGGGCCTGCTTGGGCTAAGCCATGTTAGGATCCTTCATTTCTTATTAAATTATTCCCTTTTGAGGTTCAGTAACATGTTTCCTACTTAACATAATTGTAATACACAACTCTAGTGTATTGTAATGCATAGTGTATTGTAATCATATTCAGTCAATATCTGAAGTCCAGACCACTACAGTATCGTTCTGTTGTTATTGGTTTTCAAGTTCCAATTCTTGTTTATATTTCTCACCAAGCAATCCCCTGATTTATAATATCAATTTGGATGATGATGTATTGTTATTATATATTTCATTATTTATTTGTCGCCGGCTAAGACTTCTCTGGCCTTATAGCGGTGTTCT

Ace file of the UniGene sp_v1.1_unigene26097

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	chaperone binding protein, putative; K12795 suppressor of G2 allele of SKP1	-	-	55%
FL-Next	sp=Protein SGT1 homolog B; Arabidopsis thaliana (Mouse-ear cress).	-	-	56%
Blast2go	phosphatase-related protein	-	-	69%

Source	InterPros	Term	Type	Identity
Blast2go	CS-like domain	IPR007052	-	69%
Blast2go	SGS	IPR007699	-	69%
Blast2go	HSP20-like chaperone	IPR008978	-	69%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	69%
Blast2go	Tetratricopeptide repeat-containing domain	IPR013026	-	69%
Blast2go	CS domain	IPR017447	-	69%
Blast2go	Tetratricopeptide repeat	IPR019734	-	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SUT5

Fln msg:

Fln protein: MAEDLERQAIEAFKEDEFEQAVDLYTQAIRLEPSNAGFYVDRAWANIKLENYTDAVADANRAIELDPSLAKAYLRKGIACFSLEEYQTAMAAFKAGSVLDDNNPKFKTWIDKCDARLVEEAASDGKESESVPPAVANGPVAPISDNGLPNVGSEQLTSRDNTNTNNNNLGEPLQPTKPKYRHEYYQKPNEVVVTVFAKGVSKDIVTVEFGEQFLSIIIDVPGEDNYVLQKRLFAKIIPEKCKYSILSTKIEVRLAKAEPINWTSLEYDKKQAVPQKPNIFSGTEIQRTTYPSSNTKARRDWDKLEAQVKKEEKDEKLEGDAALNKLFRDIYQDADEDTRRAMQKSFIESNGTVLSTNWKEVGAKHVDGSPPQGMEMKKWEI*

Protein Length: 383

Fln nts: ATGGGGAGAGGGCAATTTCTGGAAATTAAAAATCTTTAGGCTGGAAGTTTCCGGATACAGAGACACCGGGTATTAAACCATCCCTGAACGATTTCTAAAGCCTTCAGTTTTCGTTAATAGTCTTCGAGGCATCCCAGTTATAATTCGGATAATTATTATAGTTAATTTATTTCTAACAGACTCGGGGCACCGGGTTTCGGAATAGAAAGACTTATTCTCTTATTCTGCTCTTGGGTTCTCATTCTTTTTCGATACCGCGGAGCAGTCCTCCTCGGTTCGAATTTCTCTAAGTGCATCA_-_ATGGCTGAGGATCTTGAGAGGCAGGCGATCGAGGCCTTTAAGGAAGACGAGTTCGAACAAGCCGTCGATTTGTATACGCAGGCCATACGCCTGGAGCCTTCCAATGCCGGGTTTTATGTTGACAGGGCCTGGGCGAACATTAAGCTCGAGAATTATACAGACGCTGTGGCTGATGCAAACCGGGCAATAGAATTGGATCCTTCTCTGGCAAAGGCATATCTCCGTAAGGGTATTGCTTGCTTTTCTCTGGAGGAATATCAAACAGCTATGGCTGCATTTAAGGCAGGATCTGTTCTTGATGACAACAACCCAAAGTTTAAGACTTGGATCGATAAATGCGATGCACGGCTAGTTGAAGAAGCTGCATCAGATGGAAAAGAATCAGAGTCTGTTCCTCCAGCAGTAGCCAATGGACCTGTTGCCCCTATATCAGATAATGGTCTTCCAAATGTAGGATCAGAGCAATTGACTTCCAGAGATAATACTAATACTAATAATAATAATCTTGGTGAACCTTTGCAACCAACTAAACCTAAATACAGACATGAATACTACCAAAAACCAAATGAAGTAGTTGTTACTGTGTTTGCAAAGGGAGTGTCTAAAGACATTGTTACTGTTGAGTTTGGCGAACAGTTCTTGAGCATTATCATTGATGTTCCAGGGGAAGACAATTATGTTCTTCAGAAGCGTTTATTTGCTAAGATAATACCAGAAAAATGTAAGTATAGCATATTGTCAACTAAAATAGAGGTGCGTTTGGCTAAGGCCGAGCCAATCAATTGGACGTCTTTGGAATACGACAAAAAGCAGGCTGTACCGCAGAAACCAAATATTTTTTCAGGGACTGAAATTCAGAGAACCACGTACCCATCGTCAAACACAAAAGCCCGTAGAGATTGGGATAAACTTGAAGCTCAAGTAAAGAAAGAGGAAAAGGATGAGAAATTGGAAGGTGATGCAGCTCTTAATAAACTTTTCCGGGATATTTACCAGGATGCAGACGAGGATACAAGGAGGGCTATGCAGAAATCCTTTATAGAGTCGAATGGCACTGTTCTCTCCACGAATTGGAAAGAAGTAGGTGCTAAGCATGTTGATGGCAGCCCCCCCCAGGGCATGGAAATGAAGAAGTGGGAAATTTAA___CAACTTGCATCTAAGATTTAATCAGTGTATCATGAAATCTATTCGAATTTCTGCTTGCTCTAATTTTGTAATGTGGTATATAGGTGAAATGTGGGTAGTCATATGTCATTACCGGGTGGCTAGTCCAAAGCTGGGCGAGGGAAAAGATTCTCATAATTCATTGAATGTCTCCTGAAGATTTCGAGATGTGGGCTTGTGGGCTTGCCTTGTTTGAAATTTTTTCTGTTTTGCTGTTAGCATTAACCAGATCATCTCTCGTATGACAGCAATCAGACGCTCGGACAAAACTGCAAAATTTGATAATCCAAATGTGCCTGTAAGATTTTATTGGAAATTCAGTGTCTTCCCACGCTGGTATATCACTTAATCTATGTAACATTAAGGGCCTGCTTGGGCTAAGCCATGTTAGGATCCTTCATTTCTTATTAAATTATTCCCTTTTGAGGTTCAGTAACATGTTTCCTACTTAACATAATTGTAATACACAACTCTAGTGTATTGTAATGCATAGTGTATTGTAATCATATTCAGTCAATATCTGAAGTCCAGACCACTACAGTATCGTTCTGTTGTTATTGGTTTTCAAGTTCCAATTCTTGTTTATATTTCTCACCAAGCAATCCCCTGATTTATAATATCAATTTGGATGATGATGTATTGTTATTATATATTTCATTATTTATTTGTCGCCGGCTAAGACTTCTCTGGCCTTATAGCGGTGTTCT

Fln Alignment:

sp_v1.1_unigene26097___MAEDLERQAIEAFKEDEFEQAVDLYTQAIRLEPSNAGFYVDRAWANIKLENYTDAVADANRAIELDPSLAKAYLRKGIACFSLEEYQTAMAAFKAGSVLDDNNPKFKTWIDKCDARLVEEAASDGKESESXXXXXXXXXXXXISDNGLPNVGSEQLTSRDXXXXXXXXLGEPLQPTKPKYRHEYYQKPNEVVVTVFAKGVSKDIVTVEFGEQFLSIIIDVPGEDNYVLQKRLFAKIIPEKCKYSILSTKIEVRLAKAEPINWTSLEYDKKQAVPQKPNIFSGTEIQRTTYPSSNTKARRDWDKLEAQVXXXXXXXXXXGDAALNKLFRDIYQDADEDTRRAMQKSFIESNGTVLSTNWKEVGAKHVDGSPPQGMEMKKWE
Q9SUT5_______________MAKELAEKAKEAFLDDDFDVAVDLYSKAIDLDPNCAAFFADRAQANIKIDNFTEAVVDANKAIELEPTLAKAYLRKGTACMKLEEYSTAKAALEKGASVAPNEPKFKKMIDECDLRIAEEEKDLVQPMPP----------------SLPSSSTTPLATEADAPPVPI----PAAPAKPMFRHEFYQKPEEAVVTIFAKKVPKENVTVEFGEQILSVVIDVAGEEAYHLQPRLFGKIIPEKCRFEVLSTKVEIRLAKAEIITWASLEYGKGQSVLPKPNVSSALS-QRPVYPSS--KPAKDWDKLEAEVKKQEKDEKLDGDAAMNKFFSDIYSSADEDMRRAMNKSFAESNGTVLSTNWKEVGTKKVESTPPDGMELKKWE

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
619	90	10			0.90298
620	90			10	0.90298
621			90	10	0.90298
622		10		90	0.90298
623			10	90	0.90298
624		10		90	0.90298
626	90		10		0.90298
629		90	10		0.90298
631			10	90	0.90298
632	10		90		0.90298
633		10	90		0.90298
635			10	90	0.90298
637		10	90		0.90298
729		80		20	0.995493
733	80		20		0.995493
892		50		50	1.0
1064	20		80		0.995493
1247	81		18		0.999994
1436	83		16		0.994512
1506		33		66	1.0
1555	88			11	0.923564
1668	90			10	0.90298
1893		7		92	0.999664
2100	16			83	0.994512
2101			83	16	0.994512
2103			16	83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
790	802	TAA TAA TAA TAA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain