SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26086

Length: 1228 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26086

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	kinase, putative (EC:2.7.11.25)	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	protein	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: your sequence is shorter than subject: 332 - 431

Fln protein: GGFGSVFFGKLPEGKEIAVKVLSLFSHQGVDEFLNEVDLLSRINHRNLVSLLGYCNETREVMLIYEHMSKGSLRDHLYGPTVENPQLTWKTRLKITLDAAQGLEYLHLGCTPKIIHRDVKTANILLDGNLTGKVADFGLSRMTIDGQATHVTTAVKGTFGYLDPEYYNTQTLTEKSDVYSFGVVLLEIICGRPPIDVKLREEDINIIRWATLYILDDDVGKIREIIDKRLDGRYDMKSMTRVAKVAMRCVQVERSSRPSMSEVVAELKEVIKIEDIIAPVSVSEEIGIEGEDLVAGGVESSKRKGMEWSDNSSNIPLAGRQVSTPKSMDMD*

Protein Length: 333

Fln nts: GGGGGATTTGGATCTGTGTTCTTTGGTAAATTGCCGGAAGGAAAAGAGATCGCTGTAAAAGTGCTCTCATTATTCTCCCACCAGGGAGTTGACGAGTTTCTGAATGAGGTGGATCTTCTTTCCAGAATCAATCATAGGAATTTAGTCTCTTTACTAGGCTACTGCAATGAAACCAGAGAGGTTATGCTTATCTACGAGCACATGTCAAAAGGGTCCCTGAGGGACCATCTTTATGGTCCTACTGTAGAAAACCCCCAACTAACTTGGAAAACAAGGCTCAAAATAACGTTAGATGCAGCACAAGGCCTGGAATACCTACACCTGGGTTGTACCCCCAAGATAATTCACAGGGACGTCAAGACCGCTAACATTCTTTTAGACGGCAATTTGACTGGGAAAGTAGCGGATTTCGGTCTTTCAAGGATGACAATTGATGGACAGGCTACTCATGTTACCACTGCAGTGAAAGGAACGTTCGGATACCTTGATCCAGAGTATTACAACACTCAAACGTTGACAGAGAAGAGTGATGTTTATAGCTTTGGCGTGGTTCTACTGGAAATCATATGCGGCAGACCACCCATAGATGTTAAACTCAGGGAAGAGGACATAAACATCATTCGATGGGCGACATTGTATATACTAGATGACGATGTTGGCAAAATAAGAGAGATCATAGACAAGAGGTTGGACGGAAGATACGACATGAAATCCATGACTCGCGTTGCCAAAGTAGCTATGAGATGTGTTCAGGTGGAACGCTCTTCTAGACCGAGCATGAGTGAGGTAGTGGCAGAGCTCAAAGAGGTTATCAAAATCGAGGATATTATAGCCCCTGTATCAGTTTCAGAGGAGATTGGCATCGAAGGTGAGGATTTGGTGGCTGGCGGGGTAGAGTCGAGTAAACGCAAAGGAATGGAATGGAGTGATAACAGCTCCAATATTCCACTAGCAGGAAGACAAGTTAGCACGCCGAAATCTATGGATATGGATTGA___ACGATAGGGGTGAGCCACCGGTATCTAATGCTCTTTATGTTCAGAGGTGATAATCAAGCTTTTATGAAAATTGAAATTGGTTTCTATGGATGGGCATACTTTGTTGACTTCCATGTTAAAATATAAATTGTATGGATTTTTGCCACGGTCAAATTCTAAAAAGCTGTAATGTGTACCAAGTACATTGCACATAATCAATATAAAAAGCAAAAGCGATCTTTAGTATTTAATC

Fln Alignment:

sp_v1.1_unigene26086___GGFGSVFFGKLPE----------GKEIAVKVLSLFSHQGVDEFLNEVDLLSRINHRNLVSLLGYCNETREVMLIYEHMSKGSLRDHLYGPTVENPQLTWKTRLKITLDAAQGLEYLHLGCTPKIIHRDVKTANILLDGNLTGKVADFGLSRMTIDGQATHVTTAVKGTFGYLDPEYYNTQTLTEKSDVYSFGVVLLEIICGRPPIDVKLREEDINIIRWATLYILDDDVGKIREIIDKRLDGRYDMKSMTRVAKVAMRCVQVERSSRPSMSEVVAELKEVIKIED
B8LKY1_______________GGFGYVFKGWIEENGTAAVKPGTGLTVAVKTLNPDGLQGHKEWLAEVNFLGQLRHANLVKLIGYCIEDNQRLLVYEYMPRGSLENHLFRKGAL--PLPWSTRMKIALGAAKGLEFLHGGAEKAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKHRSNGEQNLVEWARPYLVDK--RKLYRLVDPRLSGHYSIKGAQKVAQLAHYCLSRDPKARPTMNDVVEVLTPLLSLKD

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
147	33	66			0.997452
156	66			33	0.997452
381		75		25	0.996473
589		50	50		1.0
634		25		75	0.996473
635		25		75	0.996473
685	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain