SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26060

Length: 1277 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26060

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	small nuclear ribonucleoprotein, putative; K11088 small nuclear ribonucleoprotein D3	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	small nuclear ribonucleoprotein sm d3	-	-	97%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	97%

Source	InterPros	Term	Type	Identity
Blast2go	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	97%
Blast2go	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	97%
Blast2go	Like-Sm ribonucleoprotein (LSM)-related domain	IPR010920	-	97%

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
144		30	70		1.0
146		30	70		1.0
147	30	70			1.0
764	91	2	6		0.999995
770	91	6			0.999996
774		93	6		0.999999
781	6			93	0.999999
782		6		93	0.999999
960		89	6	3	0.998304
962		6	93		0.999453
1102	10		90		0.90298
1105		10	90		0.90298
1106		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain