SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26052

Length: 419 nt

UniGene Fasta

>sp_v1.1_unigene26052
CATGGGAGTGGATACATCTGAGCGGGCAACTCCTTTAAGCATGCAGGATCAGATAGAACTTGTTATAAAACTGTACAAGCACACATTGAAACGTGCTGAGCTTCGTGATGAGCTTTTTGCACAGATTTCTAAACAAACACGCAATAATCCTGACAGGTTTTGTTTGTTAAAAGCATGGGAGCTCATGTACTTATGTAGTTCAGCAATGCCACCTGGGAAGGATATCGGGGCATACTTGTCAGAATATGTGCATGACGTTGCCAATGCTGCAGATAGTGATCTTGAAATCCAAGCCCTTGCTTTAAATACATGGAATGCTTTGAAACGTTCTGTTAAGGCTGGACCAAGGCGTAGTATCCCTGGGCGTGAAGAGATAGAAGCCTTGTTGACAGGCAGAAAACTTGCAACAATAGTCTTTT

Ace file of the UniGene sp_v1.1_unigene26052

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9SRC0_RICCO	-	-	77%
FL-Next	Isoform 2 of Kinesin-like calmodulin-binding protein OS=Arabidopsis thaliana GN=KCBP	-	-	71%
Blast2go	kinesin-like calmodulin-binding protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	pollen germination	GO:0009846	Biological Process	85%
Blast2go	trichome branching	GO:0010091	Biological Process	85%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	MyTH4 domain	IPR000857	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FHN8-2

Fln msg: Distance to subject end: 975 aas, your sequence is shorter than subject: 139 - 1259

Fln protein: MGVDTSERATPLSMQDQIELVIKLYKHTLKRAELRDELFAQISKQTRNNPDRFCLLKAWELMYLCSSAMPPGKDIGAYLSEYVHDVANAADSDLEIQALALNTWNALKRSVKAGPRRSIPGREEIEALLTGRKLATIVF

Protein Length: 140

Fln nts: CATGGGAGTGGATACATCTGAGCGGGCAACTCCTTTAAGCATGCAGGATCAGATAGAACTTGTTATAAAACTGTACAAGCACACATTGAAACGTGCTGAGCTTCGTGATGAGCTTTTTGCACAGATTTCTAAACAAACACGCAATAATCCTGACAGGTTTTGTTTGTTAAAAGCATGGGAGCTCATGTACTTATGTAGTTCAGCAATGCCACCTGGGAAGGATATCGGGGCATACTTGTCAGAATATGTGCATGACGTTGCCAATGCTGCAGATAGTGATCTTGAAATCCAAGCCCTTGCTTTAAATACATGGAATGCTTTGAAACGTTCTGTTAAGGCTGGACCAAGGCGTAGTATCCCTGGGCGTGAAGAGATAGAAGCCTTGTTGACAGGCAGAAAACTTGCAACAATAGTCTTTT

Fln Alignment:

sp_v1.1_unigene26052___MGVDTSERATPLSMQDQIELVIKLYKHTLKRAELRDELFAQISKQTRNNPDRFCLLKAWELMYLCSSAMPPGKDIGAYLSEYVHDVANAADSDLEIQALALNTWNALKRSVKAGPRRSIPGREEIEALLTGRKLATIVF
Q9FHN8-2_____________MGVDSSDRSTPPSLDERIDLVGKLFKKTLKRVELRDELFAQISKQTRHNPDRQYLIKAWELMYLCASSMPPSKDIGGYLSEYIHNVAHDATIEPDAQVLAVNTLKALKRSIKAGPRHTTPGREEIEALLTGRKLTTIVF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
337			75	25	0.996473
340			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain