SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26036

Length: 475 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene26036
CGAGGAGTATTGGAAGAGGCAGGATGCTGCACAAGTTATTGCTCTGGTAGTATGGCAAGGCCTGGGACTAGATGGAGGCAAGGGCGTGGGGAATTGGACTGAGGACCAGAAGGGAAAGAAGGTTCTGGTCGGGATTGGGGGTGGACATTATGTTCCTCGGCATATGGATATTGTGTGGAAAGAAGACGTTTGGGTAGGCCACCTGCTATCGGGATATTCTTTACCTATGGAAGAACCTAGTTTAAAGAAAAAGGAATATCATTTCAATGATATTGGTGGATCATGGAAAGATGCAATCAAGGTGGCAGTTGCAACAACACAAGAAGCATTTCCAGGAGCAGAGGTTCTTGTACATCTTGATAGTAAGAGCTTCAAGGGTTGGCAACGAAGCGTGCTCTCTCAGTTTTTGTCACAGGAGAACATACCAATTGGCAAACCTAATGACTTTTTGTAATCCTTTAGAAGCACTTTGTAA

Ace file of the UniGene sp_v1.1_unigene26036 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethanol tolerance protein GEKO1, putative n=1 Tax=Ricinus communis RepID=B9RE88_RICCO	-	-	9.94922e-44	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	protein	-	-	0.0	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to toxin	GO:0009636	Biological Process	0.0	76%
Blast2go	D-aminoacyl-tRNA deacylase activity	GO:0051499	Molecular Function	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	D-aminoacyl-tRNA deacylase	IPR007508	-	0.0	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADU7

Fln msg: your sequence is shorter than subject: 151 - 317

Fln protein: EEYWKRQDAAQVIALVVWQGLGLDGGKGVGNWTEDQKGKKVLVGIGGGHYVPRHMDIVWKEDVWVGHLLSGYSLPMEEPSLKKKEYHFNDIGGSWKDAIKVAVATTQEAFPGAEVLVHLDSKSFKGWQRSVLSQFLSQENIPIGKPNDFL*

Protein Length: 152

Fln nts: CGAGGAGTATTGGAAGAGGCAGGATGCTGCACAAGTTATTGCTCTGGTAGTATGGCAAGGCCTGGGACTAGATGGAGGCAAGGGCGTGGGGAATTGGACTGAGGACCAGAAGGGAAAGAAGGTTCTGGTCGGGATTGGGGGTGGACATTATGTTCCTCGGCATATGGATATTGTGTGGAAAGAAGACGTTTGGGTAGGCCACCTGCTATCGGGATATTCTTTACCTATGGAAGAACCTAGTTTAAAGAAAAAGGAATATCATTTCAATGATATTGGTGGATCATGGAAAGATGCAATCAAGGTGGCAGTTGCAACAACACAAGAAGCATTTCCAGGAGCAGAGGTTCTTGTACATCTTGATAGTAAGAGCTTCAAGGGTTGGCAACGAAGCGTGCTCTCTCAGTTTTTGTCACAGGAGAACATACCAATTGGCAAACCTAATGACTTTTTGTAA___TCCTTTAGAAGCACTTTGTAA

Fln Alignment:

sp_v1.1_unigene26036___EEYWKRQDAAQVIALVVWQXXXXXXXXXXGNWTEDQXXXXXXXXXXXGHYVPRHMDIVWKEDVWVGHLLSGYSLPMEEPSLKKKEYHFNDIGGSWKDAIKVAVATTQEAFPGAEVLVHLDSKSFKGWQRSVLSQFLSQENIPIGKPNDFL
D5ADU7_______________EEYWKRQDAAQVVALVVWQGLGLDGGNGVGNWTKAQTGKKVLVGIGGGHYVPRHMDIVWKEDVWVGHLLSGYSLPMEEPSLKKKEYHLNDIGGAWKEAIRVAVATTREAFPGAEVLVHLDIKSFKGWQRSVLSQFLSQENIPIGKPNEFL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
108		20		80	0.995493
265		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain