SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26034

Length: 1494 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26034

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	mitochondrial import inner membrane translocase subunit tim17, putative	-	-	54%
FL-Next	sp=Mitochondrial import inner membrane translocase subunit Tim17; Arabidopsis thaliana (Mouse-ear cress).	-	-	62%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	0.0	75%
Blast2go	mitochondrial outer membrane	GO:0005741	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	IPR003397	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SP35

Fln msg:

Fln protein: MGTPETSREPCPDRILDDVGGAFGMGAVGGSVFHLMKGIYNSPKGERILGGTQAVRLNAPRIGGSFAVWGGLFSAFDCSMVYVRQKEDPWNSIIAGAATGGFLQMRQGPRAATRSAIFGGVLLALIEGAGIMLNRVLSAQQQFPPMVEDVPNMQGPIPGFQGYGPIPANIGGPGAEPVQAPAQSSSWFGGFTGFFEGKKEESQHSGGGGKAEVLESFDQPSAPVPTFELK*

Protein Length: 232

Fln nts: ATGGGGATGGAACTTTGACCCATAGGCACTACATTCCGTTAGGAGCTTCAGAAGATTCTGAAATAGCAGAATAAGTGGGGAATATATACAGAAGGGTTTGAGTTTCCTCTAGTGTTTGTAGGCGAGAAAACGTTTTAATTTTCAGACACC_-_ATGGGCACGCCGGAGACATCGCGAGAGCCATGCCCTGATCGAATTCTAGACGATGTCGGTGGCGCCTTCGGCATGGGGGCGGTGGGAGGATCAGTTTTCCATTTGATGAAAGGAATTTACAATTCCCCCAAGGGTGAACGGATTCTTGGCGGCACGCAGGCCGTGAGGCTGAATGCCCCCCGTATTGGCGGAAGCTTCGCAGTGTGGGGCGGTCTTTTCTCGGCTTTCGATTGCTCGATGGTGTACGTCAGGCAAAAAGAGGACCCATGGAATTCTATAATCGCCGGAGCCGCCACCGGAGGGTTTCTGCAAATGCGGCAGGGGCCCAGGGCCGCTACCAGGTCCGCTATATTTGGTGGCGTTTTGCTTGCTTTGATAGAGGGTGCCGGGATTATGCTGAATAGGGTTTTGAGTGCGCAGCAACAGTTTCCGCCCATGGTTGAAGATGTGCCTAATATGCAGGGTCCTATTCCAGGGTTTCAAGGCTATGGACCCATCCCTGCCAATATTGGGGGTCCTGGAGCTGAGCCAGTTCAAGCTCCCGCCCAGAGTAGCTCCTGGTTTGGAGGATTCACTGGATTTTTTGAGGGCAAGAAAGAAGAATCTCAGCATAGTGGTGGTGGTGGAAAGGCTGAGGTTTTGGAGAGTTTTGATCAGCCCAGCGCTCCGGTGCCCACTTTTGAGTTAAAGTGA___TTCGGGAGATTTTGGTCTTTGTCGGCAGCAGCTACCAGGAATCAAAGAGAGTTTTCAGCTATCCATGCTATATGTGACCAGCTAATATAATTATGTAGTTCAAGGACGGGATTGATCCATCATGTCAAATTGACCTTGGTTGATGGAAATTCTCCTAATTTGAGTTCTGTGGCTGTTTACTCTTCAGAGCCGTAAGAAATTTTGTTTATTTATAGAGCTGTTTGGCTACGCATTAATTTATGTGAAGGCTGTGGAAATGAATGTGACAGGTGCGATGTGCTTTTTGCAAAGGGCTGACGAATAAAATGTAGCTGTAGGAGATTAGTGTATTTTTTATGCCAGTGGATGAGGGAAACACGTTTTTTCTTAAATGAACATAGATTATTTGTTTAGGACTTTTAGATAGGCTTATTGATGTTACAAATGTTACTTAGAATTCCTTTCCACAGGTTATCATGTAGTCTTTAGAAATGGTGCCTGGGAACTTACTGTATATATGTTTGTTAGAAGCTTTTATACAATTAGCACTGGTTGCTTCTTTTATTATTGTTGAGGAGTTTTTAAAAACTTTCCCAGAGAATTCATTATGGTGCTCAAGTTTCAAGATTACATTTTCTCAAATGTGAGGCACTTATTTCAATTAAACTGCAG

Fln Alignment:

sp_v1.1_unigene26034___MGTPETSREPCPDRILDDXXXXXXXXXXXXXXXHLMKGIYNSPKGERILGGTQAVRLNAPRIGGSFAVWGGLFSAFDCSMVYVRQKEDPWNSIIAGAATGGFLQMRQGPRAATRSAIFGGVLLALIEGAGIMLNRVLSAQQQF---PPMVEDVPNMQG-----PIPGFQGYXXXXXXXXXXXXXXVQAPAQ-------XXXXXXXXXXXXXXXXXXXQHSGGGGKAEVLESFDQPSAPVPTFELK
Q9SP35_______________MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKGSRFVGGTQSVSMNAPRTGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGGVLLALIEGAGIMLNKVLAQPQNMMMEDPGMQGMPGMQGMQGMPGMPGMQGMPGMQGMQMGQMQSQAQIRSESQNQNTASSSSSSSWFGGLFDKKKEEVQPGSESKTEVLESFDAP--PVPSFEFK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1396		11		88	0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
764	776	GTG GTG GTG GTG G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain