SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26027

Length: 1187 nt

Origin of reads: Biogeco_1 Biogeco_2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene26027 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	single-stranded DNA-binding protein, ssb, putative	-	-	8.96831e-44	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	single-strand binding protein	-	-	0.0	53%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	0.0	53%

Source	InterPros	Term	Type	Identity
Blast2go	Primosome PriB/single-strand DNA-binding	IPR000424	-	53%
Blast2go	Nucleic acid-binding, OB-fold	IPR012340	-	53%
Blast2go	Nucleic acid-binding, OB-fold-like	IPR016027	-	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRA8

Fln msg: your sequence is shorter than subject: 351 - 390

Fln protein: MEVHRTLIIRTFRGMALASRWIPALCNSVGQNQLTSAPVNPQITWLRFSPIIPTAFTFSSAATTSNSAQRLPKEVRTLCSAAGNAVLKGNNENNEDESLMDNANYPRPQEVPWQKELANKVHFTGVISQRVQFKQTQSGKAFAWTEIRVRTRQREETMWFPLIFFDELAETAALHLKLKDEVCVSGRFTSWRADGEYNKPKVIANTLNFIQKTSLDFSEQVVVDKNTPSPALSRQAIIHGDTFQYQKFPVESSSSDKNAQEAGANIESLWQTFFANPFEWWDNRTNKRNPRAPDFKHKDSGEALWIESRHSPSWLKSQLDVLDSRLGKWGESGSSTRSQGSLSSFQINDF*

Protein Length: 352

Fln nts: ATGGGGCTATGGGGGTGCAAAACAGTGGCCTATTTCTTACTTTTTCTCTGGTGCAAAACAACAGTGGCGGGCA_-_ATGGAAGTACATCGCACTTTGATTATCAGGACCTTCAGAGGCATGGCCTTGGCTTCCCGGTGGATTCCTGCCCTCTGTAATTCTGTTGGCCAAAACCAGCTCACCTCTGCCCCTGTAAATCCTCAAATCACTTGGCTTCGCTTTTCCCCTATCATTCCTACAGCATTCACATTTTCTTCCGCCGCGACCACTTCAAACTCTGCACAGAGATTGCCAAAAGAGGTTCGGACGCTTTGCTCTGCTGCTGGTAACGCCGTGCTTAAAGGCAATAATGAAAATAATGAAGACGAAAGCTTAATGGACAATGCCAATTATCCTCGACCACAAGAGGTGCCATGGCAAAAAGAGCTTGCCAACAAAGTCCATTTTACTGGCGTAATAAGTCAGCGTGTTCAATTCAAGCAGACACAATCAGGCAAAGCTTTCGCATGGACTGAAATTAGAGTCAGAACACGCCAGCGCGAGGAAACTATGTGGTTTCCCTTGATATTTTTTGATGAGTTGGCAGAAACTGCTGCACTACATCTCAAACTAAAGGATGAAGTTTGTGTCTCCGGTCGCTTCACTTCGTGGAGAGCAGATGGTGAATATAATAAGCCAAAGGTTATTGCAAACACACTGAATTTCATTCAAAAAACATCTCTAGATTTTTCCGAACAAGTTGTTGTAGACAAGAATACTCCATCTCCAGCTCTTTCCAGACAAGCAATTATTCACGGGGATACATTTCAATATCAAAAATTCCCAGTCGAGTCTTCTAGTTCAGACAAAAATGCACAAGAAGCTGGTGCCAACATTGAAAGTTTGTGGCAAACATTTTTCGCTAACCCATTTGAATGGTGGGACAACCGGACAAATAAGAGGAATCCAAGGGCTCCGGATTTCAAGCACAAGGATTCAGGTGAAGCATTGTGGATTGAGAGTAGACATAGTCCATCATGGCTCAAGTCACAGTTAGATGTACTGGATTCCAGGTTAGGCAAGTGGGGAGAAAGTGGATCTTCTACAAGGTCGCAGGGATCATTATCATCATTCCAGATAAATGATTTCTAG___GATATATATTTCCCAGGACAGACATTTAGGCTTTTCTATGGGACATCCTACTTGGTTGGGC

Fln Alignment:

sp_v1.1_unigene26027___MEVHRTLIIRTFRGMALASRWIPALCNSVGQNQL-----TSAPVNPQITWLRFSPIIPXXXXXXXXXXXXXXAQRLPKEVRTLCSAAGNAVLKGNNENNED-----------------------------ESLMDNANYPRPQEVPWQKELANKVHFTGVISQRVQFKQTQSGKAFAWTEIRVRTRQREETMWFPLIFFDELAETAALHLKLKDEVCVSGRFTSWRADGEYNKPK---VIANTLNFIQKTSLDFSEQVVVDKNTPSPALSRQAIIHGDT-FQYQKFPVESSSSDKNAQEAGANIESLWQTFFANPFEWWDNRTNKRNPRAPDFKHKDSGEALWIESRHSPSWLKSQLDVLDSR---LGKWXXXXXXXXXXXXXXSFQINDF
A9NRA8_______________MEVQCGLISR-FRRMAAASPWISARSESLRQNQPITFHPTSALLNPKITRPGFCPIIPNIFKFSLATATTSSARRWPKEARTVRSATDNRVVEGNDEYNEDVSSWLEAARVVRSGNTTRVVKGSSEYSDDEGSREIAKFLRPQEVPWQKELANTVHFIGTIGSPVQFKHTQSGKALAWTRLAVRSGSNGETMWFTLMFWNELAETAAQHLKKNDKVYVSGFLALQTTAGENDQPKTYKVIAKTLNFVERTSPEFSQQVVVNKNNPSLALYEQSVIHKDTPLQYQKSPVKSSSSGKNTQEDAATIESLWQAFFASPLEWWDNRNNKRNPRAPDFKHKDTGEALWIGSRYNPLWVKSQLDVLDSRMKDLGEWGGGRSSTRSRGSLSSFQDSDF

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
732	33			66	0.997452
794		16		83	0.994512
810		16	83		0.994512
1179	33	66			0.997452
1180	33	33			0.997753
1181	33	66			0.997452
1182		66	33		0.997452
1184	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain