SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26024

Length: 1714 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26024

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	LSU rRNA; Sequoiadendron giganteum	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	signal recognition particle 19 kda protein	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Signal recognition particle, SRP19 subunit	IPR002778	-	0.0	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQA1

Fln msg:

Fln protein: MEEVQPSIKKWIVIYPVYINSKKTLAEGRRIRAKKACENPTCVEIADSCIYLKLSCVIEADKAYPRDFMQRGRVRVQLKREDGSLVNPAIPSRKELMLRVAELVPRHHGRIKKQEQTPSGPSSNAGSGKSGKGGRKKK*

Protein Length: 140

Fln nts: TTTGAAAAGAGAGTTAAAGAGTGCTTGAAGTTGCCGGGAGGGAAGCGGATGGAGGCTGTCGATGCGCCTCGGTCGGATGTGGAACGGCTCAGGCTGGTCCGCCGCTCGACTTGAGGTGCAAACCAACACGGGCTGCTGCATCGTCACAAGCGCGGGTGGATTACTGCCTGTCGGTTTGCCGCTGCGGCGGTCGAGGAACGAAGCGCGCGCCCTTGTGGCGGGCCGTGTGCACCTGCGCGCTCGTGGTGTTGGTTGGCGGGCTTTCCATTCGACCCGTCTTGGAACACGGACCAAGGAGTCTAACATGTGTGCGAGTCGGCGGGTTTGAAAACCTGCGAGGCGCAAGGAAGCTGACGGGCGAGATCCCCTCTCTGGGGGGTGCATCGTCGACCGACCTTGAGCTTATGCGAAGGGTTCGAGTGCGAGCACACCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTTCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCTCACGCGCGAGTTTTATCGGGTAAAGCAAATGATTAGAGGCATCGGGGGCGTAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAAGAGGGTGCGGCTGCTCCATTGAGCCGCGCCGTGGAATCGAGAGCTCCAAGTGGGCCAACCTACTGCCTCATTAAACCCTACTTTGGTGATTCTCTCACCCAATATTGTTCCTTCCAACCAGCACCCAGGTTTGAGCTTATGGGTGTTCAGTCATCCAGTCCGCTCGTCCCCTCTAGGTTTACAGTTTGCTAAAGGGCAGCTATTTCTGCTTTGGAGTCCAAGCAATTACAGGCTTTCTTGCCGCATTTCAACCAGGGAATATCTGATACAATT_-_ATGGAGGAGGTTCAACCAAGCATAAAAAAATGGATTGTCATTTATCCTGTTTATATAAATTCGAAAAAAACTCTCGCAGAGGGTCGGCGTATCAGGGCAAAGAAAGCTTGTGAGAACCCAACTTGTGTTGAGATTGCGGATTCTTGTATATATCTGAAGCTTTCATGTGTTATAGAGGCTGACAAGGCATATCCTCGAGATTTTATGCAAAGAGGCAGAGTAAGAGTTCAGCTGAAAAGGGAAGATGGAAGTCTTGTAAATCCGGCAATACCTTCAAGGAAGGAGTTAATGCTGCGCGTAGCTGAGTTGGTTCCTCGACATCATGGCAGGATAAAGAAGCAAGAGCAGACACCGTCGGGACCTAGTTCAAATGCAGGATCTGGGAAGTCGGGGAAGGGTGGAAGGAAGAAAAAGTAA___AATATGCAAGAACATTGGGGAAACAAATTTTGTCTTCAACTGATATGGAATATGTTATTTCAAAGGCATTGTTTTTCATCATGTTTTAAATGAAAAAGTTAGCGGCCTTTGTAAAATTCTGAATGCCTGTACTTTGATTTTGTTAGGTATATTGTTCTTTGTAGTTTTCACCAACAAATTTCCCCCTTTTAACTGATTTTGTTGTTCCTTCTTTGGGTCAGGCCACATAAATATTTATTAAAATGTAATTTTACAGGCATTCATTTGTATTTTCTGCTGAACGTATTAAGGAATTCCATTGAGGAACCAAAAAAAAGTAAA

Fln Alignment:

sp_v1.1_unigene26024___QGISDTIMEEVQPSIKKWIVIYPVYINSKKTLAEGRRIRAKKACENPTCVEIADSCIYLKLSCVIEADKAYPRDFMQRGRVRVQLKREDGSLVNPAIPSRKELMLRVAELVPRHHGRIKKQEQTP
B8LQA1_______________EGMSDTIMEEDQPNIKRWIVIYPVYINSKKTLAEGRRIRAKKACENPTCVEIADSCIYLKLPCVIEADKAYPRDFMQRGRVRVQLKREDGSLVNPAIPSRKELMLRIAEMVPRHHGRIKKQEQAP

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
334	25	75			0.996473
338		75	25		0.996473
359	25		75		1.0
360			75	25	1.0
361		62	37		1.0
363	75		25		1.0
372	20	80			0.999996
374		80	20		0.999996
375			20	80	0.999996
612			66	33	0.997452
613		66	33		0.997452
614			33	66	0.997452
1500			88	11	0.923564
1659		16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain