SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25969

Length: 1169 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25969

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	BAH-PHD domain-containing protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TSM0_PHYPA	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	ebs-bah-phd domain-containing protein	-	-	75%

Source	InterPros	Term	Type	Identity
Blast2go	Bromo adjacent homology (BAH) domain	IPR001025	-	75%
Blast2go	Zinc finger, PHD-type	IPR001965	-	75%
Blast2go	Zinc finger, FYVE/PHD-type	IPR011011	-	75%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	75%
Blast2go	Zinc finger, PHD-type, conserved site	IPR019786	-	75%
Blast2go	Zinc finger, PHD-finger	IPR019787	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADA3

Fln msg: your sequence is longer than subject: 251 - 214

Fln protein: MGGSHVKDSENYPCNRPRSCVSECLGLSEAGDRIAPMVKSVMAKVPLQCCTLKSNGKVIKVGDSVLMRAQHRNQPPYVARVEKIESGPRKNMKVRVRWYYRPEDSKGGRRQFHGAKELFLSDHYDTQSVDTIEDTCVVHSFNNYSKLESVTSKDYFCRFEYMATTGAFNPQRVPVYCTCEMPYNPDDLMVQCEACKQWFHPECIDVTIEEAKAMRDFLCFECTENNNNNPGISVNDSVPPKRRKTKRQRR*

Protein Length: 252

Fln nts: _-_ATGGGGGGATCTCATGTGAAGGACAGTGAAAATTATCCCTGCAATAGGCCAAGAAGCTGTGTTTCAGAGTGTTTAGGGCTTTCGGAGGCTGGGGATCGAATCGCGCCAATGGTGAAGTCCGTGATGGCAAAGGTGCCGTTGCAATGCTGCACACTTAAAAGTAACGGAAAAGTCATTAAAGTGGGGGACTCAGTGCTGATGCGCGCTCAGCATCGGAACCAACCGCCTTACGTAGCCCGGGTGGAGAAGATTGAAAGCGGCCCGAGAAAGAATATGAAGGTTAGAGTCAGGTGGTACTATAGACCGGAGGACTCAAAAGGTGGGCGGCGCCAGTTCCATGGCGCCAAGGAGCTATTCCTGTCCGATCACTACGACACCCAGAGCGTGGATACCATTGAGGATACCTGCGTAGTCCACAGCTTCAATAATTATTCGAAACTCGAAAGCGTGACCTCCAAAGATTATTTTTGTCGCTTCGAATACATGGCCACCACTGGCGCCTTCAATCCACAACGGGTGCCTGTGTATTGCACTTGTGAAATGCCTTATAATCCCGATGATCTAATGGTGCAGTGTGAGGCATGCAAACAATGGTTTCATCCAGAGTGCATAGATGTCACTATAGAAGAAGCAAAAGCCATGAGAGATTTCCTTTGCTTCGAATGCACAGAAAACAATAACAATAATCCAGGAATCTCTGTGAATGATTCTGTTCCTCCAAAAAGGCGCAAGACAAAGCGACAAAGGAGGTGA___ATTACCATGTAGCAATTGATCCTTATGTTGGACAGGATTGGTATGATGAATGGGACTGAGATTGGCACATTGTTGAGACTAAAGTAACTGAATTTTCCTGAAGGTGTTATTGATTTTTTTGATGTCTACGTGTGTGTTGTCTGAGTAGTTTTAAGTTTGGTTTCTTGGCTAACACTGTGTTACAGTCACGTTTGGGAGCATATTTTCACTGGCGGGTACTAGGCTGTTGGTATTGTGTTTTGTTAACTATTAAATATGACCATTATTTTGAGATCCATCTATATCAATATCCATCAAGGTCTTTAGGATTCATAGTGGCATCAATTGTCAATATCTATTTAGGCCTTTAGGATTCAGAGGCATCAATTGCTTGTATGTTTTATATTGTCATTTAGGATATGTTATCCATGTAACTT

Fln Alignment:

sp_v1.1_unigene25969___MVKSVMAKVPLQCCTLKSNGKVIKVGDSVLMRAQHRNQPPYVARVEKIESGPRKNMKVRVRWYYRPEDSKGGRRQFHGAKELFLSDHYDTQSVDTIEDTCVVHSFNNYSKLESVTSKDYFCRFEYMATTGAFNPQRVPVYCTCEMPYNPDDLMVQCEACKQWFHPECIDVTIEEAKAMRDFLCFECTENNNNNPGISVNDSVPP
D5ADA3_______________MAKSGTAKEPLQCCTIRSNGKVVKVGDSVLMRAQDPDEPPYVAQVEKFERGARNNVKVRVRWYYRPEDSKAGRRQFHGAKELFLSDHYDTQSVNTIEDTCVVHSFKNYSNLESVASEDYFCRFEYTPITGYFNPDRVPVYCTCEMPYNPDDLMVQCEACKEWFHPECIGISIAEAKEMKDFLCSACKDKYKNNPGTSVNDSVPP

SNPs (tot: 6)

Position	C %	G %	T %	Probability
876	20		80	0.995493
884	80		20	0.995493
885	20	80		0.995493
892	20		80	0.995493
900	20	80		0.995493
906		40	60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain