SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25964

Length: 2593 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene25964
GTATCAACGCAGAGTACATGGGGATTCGATTAAATTTCGGTCGTGGAGTAACACAGCGAGCAAGTAAACAATGCGGAAGACGCGAAGTGTTTGACAGAAGAATCCATTTTACTTAGGGTTTGGATCGAAATCACCAGGGTTTTAGAGATTTGGTTTTTCTGGAATCAATGGCAAGGTCCAGCTCTGCAATGGCATATCCCGACAGGTTTTACGCCGCGGCTGCATACGCAGGCCTCGGATCATCTCAAAATTCTTCGAAAGCTGCAATTTCACGCTTTCAAAACGAGAACGCATTGCTTCTATACGGACTTTACCAGCAAGCGACAGTGGGCCCATGTAATGTTTCTAAACCTCGGAGCTGGAACCCCATTGAGCATAGCAAATGGACAAGCTGGAATAGCCTTGGAAATATGCCTTCTCAGGAAGCTATGAGGCTGTTCGTTAAAATATTGGAGGAGGAAGACCCTGCATGGTATTCAAAGGTACCAGAGTCTGCACCTGAGCCAGTGGTGGAAGTGGAAAAACCATCCAAGGAATCAGCTTCCCATCACGACAATTCTGTTTCTGTTCCTAAAGATACTGCCATTGACAATGGAAGTTATGTAGAGACACAAGATAAGGATGTTATATTGGAAGGCCTGGGATCAGTTGCTGTTTATGACCAGTGGGTTTCACTGTCAGTAACTGGTCGGCAACCAAAAGCCCGCTATGAGCATGCAGCGGCAGTAGTGCAAGAGAAAATGTATGTCTTTGGTGGAAACCACAATGGGCGCTACCTAAATGATATGCAGGTGCTCGATTTGAAATCTTTGACATGGTCCAAAGTGGATACAAAGATGGCATCTGACTCTTCTCAAGAACTTTTATCTCCTTGTGCTGGCCATTGCCTGATTCAATGGGGCAACAAGATTCTAGCTGTTGCTGGACATACAAAGGATCCTTCTGACGTTGTGACAGTTCGATCCTTTGACACAGAATCCTGTACATGGTGTGTACTAAAGTCATATGGAAAAGCTCCGATTGCACGCGGTGGTCAATCTGTCACTCTCGTAGGGTCCAGTTTAATTATGTTTGGTGGTGAGGACTCAAAGAGGAGTCTTCTGAATGATCTGAATATTCTTGACTTGGAAACGATGACTTGGGATGCTGTAGAAGCTGTGGGTACGCCTCCAACACCACGGTCTGATCACACTGCTACAGTACACGCAAATCGGTATCTTTTGATTTTTGGTGGCGGTTCTCATTCCACATGTTTCAATTGTCTTCATGTCCTTGACTTGCAGAGTATGGAATGGTCACGGCCAAAAATGCAAGGCACTTTGCCCACCCCTCGAGCTGGGCATGCAGGTGTCTCAATTGGTGAAAATTGGTATATCGTAGGTGGAGGTGATAACAAGAGTGGTGTCTCAGAGACCATGGTTTTGAATATGTCTACACTTGTCTGGTCCGTTGTAACCACTGTACAAGGACGAGTGCCACTTGCTAGTGAGGGTCTGAGTCTAGTGCTTACTTCAAACAATGGTGAAGATATTCTTGTTGCCTTTGGTGGATACAATGGAAGGTACAGCAATGAGGTACACGTTCTAAAACCTAGTCACAAGGGCATGCTACAGCAAAAGATGCTTGAGTCACCTGCAGGTGCCAACGTTGATACTGTATTGCCCACATCAAATGGGGTCAGGGACATAGAATATGAAGATCTGGCACAAGATGGCAAAGTTAGAGAGATTGTTATGGACAATCCTCAGTCAGATTCGATGCTCCAAAAAAGTGATGAAGCAAAAGAACGGATTATATTATCTTTAAAAGAAGACAAGGAGAATCTTGAAGCCACTCTTTCAGCAGAGCATTCCCTTACTTCTAGACTTAAGCAAGAGCTTTCTGAAGCACAAACTGCAAATGCAGATCTAACTGAGGAATTGCGATCTGTTCGTGGACAACTAGCTTCTGAACAATCAAGGTGCTTCAGACTAGAGGTAGATGTTGCAGAGCTACGGCAGAAAATGCAACAATTGGAAGCCTTACAGAAGGAAGTAGAGTTGCTGCAGCGCCAGAAAGCTGCATCTGATCAAGCTGCAGCAAATGCTGCACGGAGACAAAACTCAGGTGGAGTTTGGAGTTGGATTGCTGGGAGTCCGCCAGAGACAAAGTCTGTAGAAGCTTGAATATATTCTTAAATGTAGATTATTGCTCTAGTGCAAAGCGATTTCTTGTTATTCTTTTTTATTAGCAATATATTCATATTGAATTTTGTGTCACCAGCACCAGTGATCATATCGGAATTATCCAGTAATTTGCAAATTTTGAATTGTTCATCATGAAATGAAATATGCAATGCTATTCTTGTAAATGCTGAACGCACACATCTAATTGAGCCAAATAAGATTTATGTCTGAGCATTCTGAGTGCTTAGTGTTGTCTTTATGGCAGACATGTCATGTATGCTGCCAACTATTTTTGGATGTAATTTTTACAAAATAATTCTTGTTCATGACAACCATTACTAGATTTATTCAGTTTCTTGGTTCTACAATGTTAACTTCAAGCATTAACTAACTGGTGGAAAAGGCCATTTTCCTTCTTGGCTGTGGTT

Ace file of the UniGene sp_v1.1_unigene25964

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	acyl-CoA binding protein, putative	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	acyl- binding	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	78%
Blast2go	lipid transport	GO:0006869	Biological Process	78%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%
Blast2go	fatty-acyl-CoA binding	GO:0000062	Molecular Function	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%
Blast2go	cytosol	GO:0005829	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Blast2go	Acyl-CoA-binding protein, ACBP	IPR000582	-	78%
Blast2go	Kelch repeat type 2	IPR011498	-	78%
Blast2go	FERM/acyl-CoA-binding protein, 3-helical bundle	IPR014352	-	78%
Blast2go	Kelch-type beta propeller	IPR015915	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPX6

Fln msg:

Fln protein: MARSSSAMAYPDRFYAAAAYAGLGSSQNSSKAAISRFQNENALLLYGLYQQATVGPCNVSKPRSWNPIEHSKWTSWNSLGNMPSQEAMRLFVKILEEEDPAWYSKVPESAPEPVVEVEKPSKESASHHDNSVSVPKDTAIDNGSYVETQDKDVILEGLGSVAVYDQWVSLSVTGRQPKARYEHAAAVVQEKMYVFGGNHNGRYLNDMQVLDLKSLTWSKVDTKMASDSSQELLSPCAGHCLIQWGNKILAVAGHTKDPSDVVTVRSFDTESCTWCVLKSYGKAPIARGGQSVTLVGSSLIMFGGEDSKRSLLNDLNILDLETMTWDAVEAVGTPPTPRSDHTATVHANRYLLIFGGGSHSTCFNCLHVLDLQSMEWSRPKMQGTLPTPRAGHAGVSIGENWYIVGGGDNKSGVSETMVLNMSTLVWSVVTTVQGRVPLASEGLSLVLTSNNGEDILVAFGGYNGRYSNEVHVLKPSHKGMLQQKMLESPAGANVDTVLPTSNGVRDIEYEDLAQDGKVREIVMDNPQSDSMLQKSDEAKERIILSLKEDKENLEATLSAEHSLTSRLKQELSEAQTANADLTEELRSVRGQLASEQSRCFRLEVDVAELRQKMQQLEALQKEVELLQRQKAASDQAAANAARRQNSGGVWSWIAGSPPETKSVEA*

Protein Length: 667

Fln nts: GTATCAACGCAGAGTACATGGGGATTCGATTAAATTTCGGTCGTGGAGTAACACAGCGAGCAAGTAAACAATGCGGAAGACGCGAAGTGTTTGACAGAAGAATCCATTTTACTTAGGGTTTGGATCGAAATCACCAGGGTTTTAGAGATTTGGTTTTTCTGGAATCA_-_ATGGCAAGGTCCAGCTCTGCAATGGCATATCCCGACAGGTTTTACGCCGCGGCTGCATACGCAGGCCTCGGATCATCTCAAAATTCTTCGAAAGCTGCAATTTCACGCTTTCAAAACGAGAACGCATTGCTTCTATACGGACTTTACCAGCAAGCGACAGTGGGCCCATGTAATGTTTCTAAACCTCGGAGCTGGAACCCCATTGAGCATAGCAAATGGACAAGCTGGAATAGCCTTGGAAATATGCCTTCTCAGGAAGCTATGAGGCTGTTCGTTAAAATATTGGAGGAGGAAGACCCTGCATGGTATTCAAAGGTACCAGAGTCTGCACCTGAGCCAGTGGTGGAAGTGGAAAAACCATCCAAGGAATCAGCTTCCCATCACGACAATTCTGTTTCTGTTCCTAAAGATACTGCCATTGACAATGGAAGTTATGTAGAGACACAAGATAAGGATGTTATATTGGAAGGCCTGGGATCAGTTGCTGTTTATGACCAGTGGGTTTCACTGTCAGTAACTGGTCGGCAACCAAAAGCCCGCTATGAGCATGCAGCGGCAGTAGTGCAAGAGAAAATGTATGTCTTTGGTGGAAACCACAATGGGCGCTACCTAAATGATATGCAGGTGCTCGATTTGAAATCTTTGACATGGTCCAAAGTGGATACAAAGATGGCATCTGACTCTTCTCAAGAACTTTTATCTCCTTGTGCTGGCCATTGCCTGATTCAATGGGGCAACAAGATTCTAGCTGTTGCTGGACATACAAAGGATCCTTCTGACGTTGTGACAGTTCGATCCTTTGACACAGAATCCTGTACATGGTGTGTACTAAAGTCATATGGAAAAGCTCCGATTGCACGCGGTGGTCAATCTGTCACTCTCGTAGGGTCCAGTTTAATTATGTTTGGTGGTGAGGACTCAAAGAGGAGTCTTCTGAATGATCTGAATATTCTTGACTTGGAAACGATGACTTGGGATGCTGTAGAAGCTGTGGGTACGCCTCCAACACCACGGTCTGATCACACTGCTACAGTACACGCAAATCGGTATCTTTTGATTTTTGGTGGCGGTTCTCATTCCACATGTTTCAATTGTCTTCATGTCCTTGACTTGCAGAGTATGGAATGGTCACGGCCAAAAATGCAAGGCACTTTGCCCACCCCTCGAGCTGGGCATGCAGGTGTCTCAATTGGTGAAAATTGGTATATCGTAGGTGGAGGTGATAACAAGAGTGGTGTCTCAGAGACCATGGTTTTGAATATGTCTACACTTGTCTGGTCCGTTGTAACCACTGTACAAGGACGAGTGCCACTTGCTAGTGAGGGTCTGAGTCTAGTGCTTACTTCAAACAATGGTGAAGATATTCTTGTTGCCTTTGGTGGATACAATGGAAGGTACAGCAATGAGGTACACGTTCTAAAACCTAGTCACAAGGGCATGCTACAGCAAAAGATGCTTGAGTCACCTGCAGGTGCCAACGTTGATACTGTATTGCCCACATCAAATGGGGTCAGGGACATAGAATATGAAGATCTGGCACAAGATGGCAAAGTTAGAGAGATTGTTATGGACAATCCTCAGTCAGATTCGATGCTCCAAAAAAGTGATGAAGCAAAAGAACGGATTATATTATCTTTAAAAGAAGACAAGGAGAATCTTGAAGCCACTCTTTCAGCAGAGCATTCCCTTACTTCTAGACTTAAGCAAGAGCTTTCTGAAGCACAAACTGCAAATGCAGATCTAACTGAGGAATTGCGATCTGTTCGTGGACAACTAGCTTCTGAACAATCAAGGTGCTTCAGACTAGAGGTAGATGTTGCAGAGCTACGGCAGAAAATGCAACAATTGGAAGCCTTACAGAAGGAAGTAGAGTTGCTGCAGCGCCAGAAAGCTGCATCTGATCAAGCTGCAGCAAATGCTGCACGGAGACAAAACTCAGGTGGAGTTTGGAGTTGGATTGCTGGGAGTCCGCCAGAGACAAAGTCTGTAGAAGCTTGA___ATATATTCTTAAATGTAGATTATTGCTCTAGTGCAAAGCGATTTCTTGTTATTCTTTTTTATTAGCAATATATTCATATTGAATTTTGTGTCACCAGCACCAGTGATCATATCGGAATTATCCAGTAATTTGCAAATTTTGAATTGTTCATCATGAAATGAAATATGCAATGCTATTCTTGTAAATGCTGAACGCACACATCTAATTGAGCCAAATAAGATTTATGTCTGAGCATTCTGAGTGCTTAGTGTTGTCTTTATGGCAGACATGTCATGTATGCTGCCAACTATTTTTGGATGTAATTTTTACAAAATAATTCTTGTTCATGACAACCATTACTAGATTTATTCAGTTTCTTGGTTCTACAATGTTAACTTCAAGCATTAACTAACTGGTGGAAAAGGCCATTTTCCTTCTTGGCTGTGGTT

Fln Alignment:

sp_v1.1_unigene25964___MARSSSXXXXXXXXXXXXXXXGLGSSQNSSKAAISRFQNENALLLYGLYQQATVGPCNVSKPRSWNPIEHSKWTSWNSLGNMPSQEAMRLFVKILEEEDPAWYXXXXXXXXXXXXXXXXXXXXXXXHHDNSVSVPKDTAIDNGSYVETQDKDVILEGLGSVAVYDQWVSLSVTGRQPKARYEHAAAVVQEKMYVFGGNHNGRYLNDMQVLDLKSLTWSKVDTKMASDSSQELLSPCAGHCLIQWGNKILAVAGHTKDPSDVVTVRSFDTESCTWCVLKSYGKAPIARGGQSVTLVGSSLIMFGGEDSKRSLLNDLNILDLETMTWDAVEAVGTPPTPRSDHTATVHANRYLLIFGGGSHSTCFNCLHVLDLQSMEWSRPKMQGTLPTPRAGHAGVSIGENWYIVGGGDNKSGVSETMVLNMSTLVWSVVTTVQGRVPLASEGLSLVLTSNNGEDILVAFGGYNGRYSNEVHVLKPSHKGMLQQKMLESPAGANVDTVLPTSNGVRDIEYEDLAQDGKVREIVMDNPQSDSMLQKSDEAKERIILSLKEDKENLEATLSAEHSLTSRLKQELSEAQTANADLTEELRSVRGQLASEQSRCFRLEVDVAELRQKMQQLEALQKEVELLQRQKXXXXXXXXXXXXXXXXGGVWSWIAGSPPETKSVEA
C0PPX6_______________MARSSSAMAYPDRFYAAAAYAGLGSSQDSSKAAISRFQNENALLLYGLYQQATVGPCNVSKPRSWNPIEHSKWTSWNNLGNMPSQEAMRLFVKILEEEDPAWYSKVPESAPEPEVEVEKPSKESAFHHDNSVSVPKDTAIDNGSFVETQDKDVILEGLGSVAVYDQWVSLSVTGRQLKARYEHAAAVVQEKMYVFGGNHNGRYLNDLQVLDLKSLMWSKVDTKMASDSSQELLSPCAGHCLIQWGNKILAVAGHTKDPSDIVTVRSFDTESCTWCVLKSYGKAPIARGGQSVTLVGSSLVMFGGEDSMRSLLNDLNILDLETMTWDAIEAVGTPPSPRSDHTATVHANRYLLIFGGGSHSTCFNDLHVLDLQSMEWSRPKMQGTLPTPRAGHAGVTIGENWYIVGGGDNKSGVSETMVLNMSTLVWSVVTTVQGRVPLASEGLSLVVTSNNGEDILVAFGGYNGRYSNEVHVLKPSHKGMLQQKMLESSAGASVDPVLPTSNGVRDIEYEDLAQDGKVREIVMDNPQSDSMLQKSDEAKERIIVSLKEDKDNLEATLSAEHSLTSRLKQELAEAQTANADLTEELRSVRGQLASEQSRCFRLEVDVAELRQKMQQMEALQKEVELLQRQKAASDQAAANAARRQSSGGVWSWIAGSPPDAKSVEA

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
1201	10			90	0.90298
1254		11		88	0.923564
1255			11	88	0.923564
1258	88		11		0.923564
1260	11			88	0.923564
1264			11	88	0.923564
1723			88	11	0.923564
1724	88		11		0.923564
1726	88		11		0.923564
1793		11		88	0.923564
2119	94	5			0.998744
2120		5	91	2	0.995208
2125	94	5			0.998744
2128	5		94		0.998744
2232		91		8	0.999766
2496	80		20		0.995493
2500	20	80			0.995493
2501	20	80			0.995493
2503	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain