SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25959

Length: 531 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene25959
GCCACAGAGGAGGCCACATTAACAAACGACGCACCATATCCATACCCATCTGGAGACCCTGTCGACAATCTGAACAGCAAGGTCATGAAATTCCTTATCGAAACCCCGCCGGATGCCGCGAGTTCTGCTGAGAATCGATCATCCACCCGGATCCCTGAAAAACTGGTTGAATATCGTCGGCCCCGAAAGAAAAACGCAGCGCATACGAGGTACTTGACCATGTATGAATACGAAAGCGCTTCTGGAGAACCGACCCATTTGTTCATCAACGGATTACCCTTCGACGCACAGGTTACAGAGACCCCAAGGCAAGGAACCAGCGAGGTATGGCATGTCATCAATCTGACGGAGGACAATCATCCTCTGCATATCCATCTGGGGCTGTTCATAGTCCTTGACCAAACAGAACTGCTGAAGATGGAGGAATTTAAGAGCTGCATGCAGAAGAATAACGACGCGCTGAAATGCGAGATACAGAAGCACGCGAAGGGAAAAGTGATGGCAGCTCCTGCGCAGGAGCGTGGATGGAAA

Ace file of the UniGene sp_v1.1_unigene25959

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	LPR1; LPR1 (Low Phosphate Root1); copper ion binding / oxidoreductase, acting on diphenols and related substances as donors, oxygen as acceptor	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	spore coat protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	71%
Blast2go	meristem maintenance	GO:0010073	Biological Process	71%
Blast2go	membrane	GO:0016020	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cupredoxin	IPR008972	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRY9

Fln msg: Distance to subject end: 58 aas, your sequence is shorter than subject: 177 - 583

Fln protein: ATEEATLTNDAPYPYPSGDPVDNLNSKVMKFLIETPPDAASSAENRSSTRIPEKLVEYRRPRKKNAAHTRYLTMYEYESASGEPTHLFINGLPFDAQVTETPRQGTSEVWHVINLTEDNHPLHIHLGLFIVLDQTELLKMEEFKSCMQKNNDALKCEIQKHAKGKVMAAPAQERGWK

Protein Length: 178

Fln nts: GCCACAGAGGAGGCCACATTAACAAACGACGCACCATATCCATACCCATCTGGAGACCCTGTCGACAATCTGAACAGCAAGGTCATGAAATTCCTTATCGAAACCCCGCCGGATGCCGCGAGTTCTGCTGAGAATCGATCATCCACCCGGATCCCTGAAAAACTGGTTGAATATCGTCGGCCCCGAAAGAAAAACGCAGCGCATACGAGGTACTTGACCATGTATGAATACGAAAGCGCTTCTGGAGAACCGACCCATTTGTTCATCAACGGATTACCCTTCGACGCACAGGTTACAGAGACCCCAAGGCAAGGAACCAGCGAGGTATGGCATGTCATCAATCTGACGGAGGACAATCATCCTCTGCATATCCATCTGGGGCTGTTCATAGTCCTTGACCAAACAGAACTGCTGAAGATGGAGGAATTTAAGAGCTGCATGCAGAAGAATAACGACGCGCTGAAATGCGAGATACAGAAGCACGCGAAGGGAAAAGTGATGGCAGCTCCTGCGCAGGAGCGTGGATGGAAA

Fln Alignment:

sp_v1.1_unigene25959___TEEATLTNDAPYPYPSGDPVDNLNSKVMKFLIETPPDAASSAENRSSTRIPEKLVEYRRPRKKNAAHTRYLTMYEYESASGEPTHLFINGLPFDAQVTETPRQGTSEVWHVINLTEDNHPLHIHLGLFIVLDQTELLKMEEFKSCMQKNNDALKCEIQKHAKGKVMAAPAQERGWK
B8LRY9_______________TGEAILTNDAVYPYPSGDPVDHLNSKVMKFVIESKRGALSSHDE---SRIPEKLIEYRRPLKESAAHTRYITMYEYESASEEPTHLFFNGLPYDAPATETPRQGTSELWHVIDLTDDNHPLHIHLGLFVVLQQTELLKLDEFKACMQKQNDALRCNVEKHAKGKVMAAPVQERGWK

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
119		33		66	0.997452
145	33		66		0.997452
146		66	33		0.997452
187	33		66		0.997452
188	33	66			0.997452
200		33		66	0.997452
243	50			50	1.0
306	50		50		1.0
363	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain