SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25948

Length: 1954 nt

UniGene Fasta

>sp_v1.1_unigene25948
TCTGAGATCACAGGGGACGGTGATGTAGAACAAGGGTTAAATACTTCCCAAGACGATGTTACAAGGACACAGCCAAGTTTAGTGCTGTCCAACTCTGGTAAAGCATTGGAGCAGACAGGAAAGAAGCAGTATGTGAAACAGGTTACTGGAAGGTATAATGATACTGATCTACATTTGGCAGCCAAGAAGGGAGATTTAGAGGCTGTGAAGAAGCTTTTAGATGGGTTACATTCCCAAAACAGTGTACAGAACCCTCAGGCTGATATAGAAATGGGGGAGATTCGATCATGTTTGGTAGATGAAGAAAATGAGCTTGCTGAGACACCATTGTATATTGCGGCTGAACAGGGGCATTTGGATGTGTTGAAGGAGCTTTTGAAGTTTGCACATCCAGAAACTCTTGCAAAGAAAAATCACACTGGATATGATGTCTTTCATATTGCAGCAAAACAGGGCCACATAAGTATTGTCAAGGAGCTTCTGAACCGCAACCCTGATCTTTGCAAAACTTTGGATTTATCAAATGCCACACCTCTTATTTCTGCTGCAACTAAGGGTCATGTTGAGGTGGTCAATGAGCTTCTTGCTGGAGACACTCAGTTGACAGGGATTGCTAGAAGCAATGGCAAGAATGCACTGCATCTGGCTGCAAGAAGTGGTTACACAGATATTGTGAGAGCTTTGCTAGCAAAGGATCCACAAATGGCTCGAAGAACAGACAGAAAGGGCCAGACAGCATTGCACATGGCAGCCAAAGGAGCCAACTGTTTGGATGTGGTGAAGGAACTACTTCAGGTTGACCCAGCAGTAGTTATGCTGCCTGACAGAAATGGAAACACACCACTACATGTAGCTACACGGAAGAAGCGCGAGGAGATAGTGAAAGAGCTTCTTAAGATGCCAGACATCAACGTCAATGTAATGAATCGGTTACATAAGACTGCTATGGATTTGGCAGAAGAGTTGTCCAACTCTGAAGCGGCATCAGAAATCAAAGAATGTCTTGCTGACTTTGGTGCAGTTAGGGCTAAGGATTTGAATCGACCTAGAGATGAGTTAAAAAAGACTGTGAGTGAAATACATCACGAAGTTTACCATCAGCTGAGGCAGACTGAAAAGACCAATAAAAATGTGAATGGCATAGCGAAGGAACTAAAGAAACTGCACAGGGAAGGGATAAACAATGCCACGAACTCAATAACAGTTGTTGCTGTCCTGTTTGCCACTATAGCATTTGCTGCCCTTTTCACAGTTCCTGGTGGCTATGGCTATGTTGTTAATGGAGAGGCCACAGTAGCCAATAATCCACTGTTCCAAATATTTTTCATCTCCAATGCATTTGCCCTGTTTACATCGTTAGCTGTTGTGGTAGTACAGATCACTCTAGTACGATGGGAAACAAGATCTCAGAGAAAAGTGGTGGAAGTGATTAATAAACTAATGTGGCTGGCTTCTGCATGTACAACCGTAGCATTCATTGCATCTGCATACATTGTTGCAGGCCGCCATGAGCTATGGTTAGCAATCACTGTTACATTAATAGGTGGCATAATTATGATTAGTGTGTTGGGTACAATGACCTACTTTGTTGTCAAATTCAAGAGAAACAGGTCTTTCAGGAAAAGAAAATCTTCGAATAGCCGTGGATCAAACTCATGGCACCTACCTTCAGAGTTTTCTGAATCTGAATATGACAGGATATATGTACTCTAATAACTGCAGCTTCAAATATAATGCATTTAAATCACTTATGTGATTTAACTCATATGGATTCTGTCAAACTCATTGGATTCACCATATGTATGCTTCTTTGCATCCACTGTAATTTTTGTAGACCTGAAGCTTATTCAGAGAAGCAATCCTGATCAGTACATTGAGTTTTGATTACCATGGGTTCTGCTCAGCACTGTAGGATTTTGGATGGAATCATTGCAATCTGCTGCTACATACCTGA

Ace file of the UniGene sp_v1.1_unigene25948

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ankyrin repeat-containing protein, putative	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	ankyrin repeat-containing	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	0.0	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	77%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL37

Fln msg: atg_distance in limit (1-15): atg_distance = 15, W2: There is no M at the beginning,

Fln protein: SEITGDGDVEQGLNTSQDDVTRTQPSLVLSNSGKALEQTGKKQYVKQVTGRYNDTDLHLAAKKGDLEAVKKLLDGLHSQNSVQNPQADIEMGEIRSCLVDEENELAETPLYIAAEQGHLDVLKELLKFAHPETLAKKNHTGYDVFHIAAKQGHISIVKELLNRNPDLCKTLDLSNATPLISAATKGHVEVVNELLAGDTQLTGIARSNGKNALHLAARSGYTDIVRALLAKDPQMARRTDRKGQTALHMAAKGANCLDVVKELLQVDPAVVMLPDRNGNTPLHVATRKKREEIVKELLKMPDINVNVMNRLHKTAMDLAEELSNSEAASEIKECLADFGAVRAKDLNRPRDELKKTVSEIHHEVYHQLRQTEKTNKNVNGIAKELKKLHREGINNATNSITVVAVLFATIAFAALFTVPGGYGYVVNGEATVANNPLFQIFFISNAFALFTSLAVVVVQITLVRWETRSQRKVVEVINKLMWLASACTTVAFIASAYIVAGRHELWLAITVTLIGGIIMISVLGTMTYFVVKFKRNRSFRKRKSSNSRGSNSWHLPSEFSESEYDRIYVL*

Protein Length: 572

Fln nts: TCTGAGATCACAGGGGACGGTGATGTAGAACAAGGGTTAAATACTTCCCAAGACGATGTTACAAGGACACAGCCAAGTTTAGTGCTGTCCAACTCTGGTAAAGCATTGGAGCAGACAGGAAAGAAGCAGTATGTGAAACAGGTTACTGGAAGGTATAATGATACTGATCTACATTTGGCAGCCAAGAAGGGAGATTTAGAGGCTGTGAAGAAGCTTTTAGATGGGTTACATTCCCAAAACAGTGTACAGAACCCTCAGGCTGATATAGAAATGGGGGAGATTCGATCATGTTTGGTAGATGAAGAAAATGAGCTTGCTGAGACACCATTGTATATTGCGGCTGAACAGGGGCATTTGGATGTGTTGAAGGAGCTTTTGAAGTTTGCACATCCAGAAACTCTTGCAAAGAAAAATCACACTGGATATGATGTCTTTCATATTGCAGCAAAACAGGGCCACATAAGTATTGTCAAGGAGCTTCTGAACCGCAACCCTGATCTTTGCAAAACTTTGGATTTATCAAATGCCACACCTCTTATTTCTGCTGCAACTAAGGGTCATGTTGAGGTGGTCAATGAGCTTCTTGCTGGAGACACTCAGTTGACAGGGATTGCTAGAAGCAATGGCAAGAATGCACTGCATCTGGCTGCAAGAAGTGGTTACACAGATATTGTGAGAGCTTTGCTAGCAAAGGATCCACAAATGGCTCGAAGAACAGACAGAAAGGGCCAGACAGCATTGCACATGGCAGCCAAAGGAGCCAACTGTTTGGATGTGGTGAAGGAACTACTTCAGGTTGACCCAGCAGTAGTTATGCTGCCTGACAGAAATGGAAACACACCACTACATGTAGCTACACGGAAGAAGCGCGAGGAGATAGTGAAAGAGCTTCTTAAGATGCCAGACATCAACGTCAATGTAATGAATCGGTTACATAAGACTGCTATGGATTTGGCAGAAGAGTTGTCCAACTCTGAAGCGGCATCAGAAATCAAAGAATGTCTTGCTGACTTTGGTGCAGTTAGGGCTAAGGATTTGAATCGACCTAGAGATGAGTTAAAAAAGACTGTGAGTGAAATACATCACGAAGTTTACCATCAGCTGAGGCAGACTGAAAAGACCAATAAAAATGTGAATGGCATAGCGAAGGAACTAAAGAAACTGCACAGGGAAGGGATAAACAATGCCACGAACTCAATAACAGTTGTTGCTGTCCTGTTTGCCACTATAGCATTTGCTGCCCTTTTCACAGTTCCTGGTGGCTATGGCTATGTTGTTAATGGAGAGGCCACAGTAGCCAATAATCCACTGTTCCAAATATTTTTCATCTCCAATGCATTTGCCCTGTTTACATCGTTAGCTGTTGTGGTAGTACAGATCACTCTAGTACGATGGGAAACAAGATCTCAGAGAAAAGTGGTGGAAGTGATTAATAAACTAATGTGGCTGGCTTCTGCATGTACAACCGTAGCATTCATTGCATCTGCATACATTGTTGCAGGCCGCCATGAGCTATGGTTAGCAATCACTGTTACATTAATAGGTGGCATAATTATGATTAGTGTGTTGGGTACAATGACCTACTTTGTTGTCAAATTCAAGAGAAACAGGTCTTTCAGGAAAAGAAAATCTTCGAATAGCCGTGGATCAAACTCATGGCACCTACCTTCAGAGTTTTCTGAATCTGAATATGACAGGATATATGTACTCTAA___TAACTGCAGCTTCAAATATAATGCATTTAAATCACTTATGTGATTTAACTCATATGGATTCTGTCAAACTCATTGGATTCACCATATGTATGCTTCTTTGCATCCACTGTAATTTTTGTAGACCTGAAGCTTATTCAGAGAAGCAATCCTGATCAGTACATTGAGTTTTGATTACCATGGGTTCTGCTCAGCACTGTAGGATTTTGGATGGAATCATTGCAATCTGCTGCTACATACCTGA

Fln Alignment:

sp_v1.1_unigene25948___SEITGDGDVEQGLNTSQDDVTRTQPSLVLSNSGKALEQTGKKQYVKQVTGRYNDTDLHLAAKKGDLEAVKKLLDGLHSQNSVQNPQADIEMGEIRSCLVDEENELAETPLYIAAEQGHLDVLKELLKFAHPETLAKKNHTGYDVFHIAAKQGHISIVKELLNRNPDLCKTLDLSNATPLISAATKGHVEVVNELLAGDTQLTGIARSNGKNALHLAARSGYTDIVRALLAKDPQMARRTDRKGQTALHMAAKGANCLDVVKELLQVDPAVVMLPDRNGNTPLHVATRKKREEIVKELLKMPDINVNVMNRLHKTAMDXXXXXXXXXXXXXIKECLADFGAVRAKDLNRPRDELKKTVSEIHHEVYHQLRQTEKTNKNVNGIAKELKKLHREGINNATNSXXXXXXXXXXXXXXXXXXXPGGYGYVVNGEATVANNPLFQIFFISNAFALFTSLAVVVVQITLVRWETRSQRKVVEVINKLMWLASACTTVAFIASAYIVAGRHELWLAITVTLIGGIIMISVLGTMTYFVVXXXXXXXXXXXXXXXXXXXXXWHLPSEFSESEYDRIYVL
B8LL37_______________SDITGDGDVEQGLNSSQDNVTRAQPSLVLSNSGKALEQTGKKQYVKQVTGRYNDTDLHLAAKKGDLEAVKKILDGLHSENGVQNPQADIEMGEIRSCLVDEENELFETPLYIAAEQGHLDVLKELLKFAHPETLVKKNHTGYDVFHIAAKQGHISIVKELLNYHPDLSKTLDLSNATPLISAATKGHVEVVNELLAKDSQLTGIARSNGKNALHMAARSGYTDIVRALLAKEPQMARRTDKKGQTALHMAAKGANCLDVVKELLQVDPAVVMLPDIKGNTSLHVATRKKREEIVKELLKMPDINVNVMNRLHKTAMDLAEELPNSDEASEIKDCLADFGAVRAKDLNRPRDELKKTVSEIHHEVYHQLKQTEKTNKNVNGIAKELKKLHREGINNATNSVTVVAVLFATIAFAALFTVPGGYGYSVYGEATVANNTLFQIFFISNAFALFTSLAVVVVQITLVRWETKSQRKVVGVINKLMWLASACTTVAFIASAYIVAGRHELWLAIIVTLIGGIIMVGVLGTMTYFLVKFKRNRSFRKRKSSNSRGSNSWNLPSEFSESEIEKIYVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain