SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25935

Length: 517 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene25935
TGCTGGTAAATGCTTGGGCCATAGGAAGAGACCCAACCATCTGGCAAGAACCCACAAAGTTCAAGCCTGAGAGATTTGTGGAGTCTGAGGTGGAATACAGGGGGCAAAACTTCGAACTGATTCCGTTTGGAGTAGGAAGAAGAATTTGCCCTGGGCTTCCTCTGGCTCATAGGATGGTTCACGTGGTCACAGCTTCTCTCCTCCACTCATTCAACTGGTCTCTCCCGGATGGCATCACAACAGATACCATGGACATGAGTGAGAGATTTGGAATCACCCTGCAGAGAGCTTCTCCATTAATTGCAATCCCCTCACTGCGCTTGCCCTCTCATCTCTTTAACGATCAGCATCACTAGTCAAACTTCTTCTGTCAACCAATCCTCTACCTAAATATCATCCTTTCCTTGCATGTAGATGTATGTATGGATGTCAGACCTTTCTTGCATATCATCATTTCCTTGCATGGAGATGTATGTATGTATGTCAGGCCTTTCTTGCATAATATAATATAATAGGA

Ace file of the UniGene sp_v1.1_unigene25935

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9RBW9_RICCO	-	-	1.0e-37	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	cytochrome p450	-	-	0.0	80%

Source	InterPros	Term	Type	Identity
Blast2go	Cytochrome P450	IPR001128	-	80%
Blast2go	Cytochrome P450, E-class, group I	IPR002401	-	80%
Blast2go	Cytochrome P450, conserved site	IPR017972	-	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A813

Fln msg: your sequence is shorter than subject: 118 - 321

Fln protein: LVNAWAIGRDPTIWQEPTKFKPERFVESEVEYRGQNFELIPFGVGRRICPGLPLAHRMVHVVTASLLHSFNWSLPDGITTDTMDMSERFGITLQRASPLIAIPSLRLPSHLFNDQHH*

Protein Length: 119

Fln nts: TGCTGGTAAATGCTTGGGCCATAGGAAGAGACCCAACCATCTGGCAAGAACCCACAAAGTTCAAGCCTGAGAGATTTGTGGAGTCTGAGGTGGAATACAGGGGGCAAAACTTCGAACTGATTCCGTTTGGAGTAGGAAGAAGAATTTGCCCTGGGCTTCCTCTGGCTCATAGGATGGTTCACGTGGTCACAGCTTCTCTCCTCCACTCATTCAACTGGTCTCTCCCGGATGGCATCACAACAGATACCATGGACATGAGTGAGAGATTTGGAATCACCCTGCAGAGAGCTTCTCCATTAATTGCAATCCCCTCACTGCGCTTGCCCTCTCATCTCTTTAACGATCAGCATCACTAG___TCAAACTTCTTCTGTCAACCAATCCTCTACCTAAATATCATCCTTTCCTTGCATGTAGATGTATGTATGGATGTCAGACCTTTCTTGCATATCATCATTTCCTTGCATGGAGATGTATGTATGTATGTCAGGCCTTTCTTGCATAATATAATATAATAGGA

Fln Alignment:

sp_v1.1_unigene25935___LVNAWAIGRDPTIWQEPTKFKPERFVESEVEYRGQNFELIPFGVGRRICPGLPLAHRMVHVVTASLLHSFNWSLPDGITTDTMDMSERFGITLQRASPLIAIPSLRLPSHLFNDQHH
D5A813_______________LVNAWAIGRDPTIWDEPSEFKPERFVESELEYRGQNFELIPSGAGRRICPGLPLAHRMVHVVIASLLHSFNWSLPDGITADNMDMTEKFGITLQRGSPLIAVPSPRLPAHLFNDQYH

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
328	14	85			0.993533
370		28	71		1.0
386		85		14	0.993533
391	71	28			1.0
399	14	85			0.993533
412			14	85	0.993533
426			85	14	0.993533
434	85		14		0.993533
448	14			85	0.993533
449		85		14	0.993533
456	14			85	0.993533
457		85		14	0.993533
458	14	85			0.993533
466			85	14	0.993533
481	83	16			0.994512
482		14		85	0.993533

SSRs (tot: 2)

Start position	End position	Sequence	Length
469	484	ATGT ATGT ATGT ATGT	16
499	514	ATAAT ATAAT ATAAT A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain