SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25933

Length: 1273 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25933

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	uncharacterized protein	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	HAD-like domain	IPR023214	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMA0

Fln msg:

Fln protein: MGSLYALDFDGVLCDSCGESSISALKAAKVKWPELFTGVEPETEDWILDSMRTVRPVVETGYENLLLVRLLLELKKPMIQKSSVVPGLTVERILENWSKLKPVIMMEWGESSEELVELFGKVRDEWLDHDLSGWIGANRFYPGTADALRFASSKVYIVTTKQARFAEALLQKLAGVSIPPERIYGLGTGPKVEVLKQLQSKPEHSGLTLHFVEDRVATLKNVIKEPQLDKWNLYLGTWGYNTPSEREEANTISRINLVDLHDFCAKLKCEPPKLEEKNRSI*

Protein Length: 283

Fln nts: ATGGGGAAATTTGATCCTGGCATTCGGACCAGGGTTAACTTATCGGATTTTCTCTAAGCTCAGGATATTGTAGTTTAAAGGGAATGTGCTTGCTTCCAAATTATACAGAGCTCAGAGATCTTTGTTATTTGTCAAGGGCGAGTGCAAGGCTGTGGAATTGGAG_-_ATGGGCAGCCTCTACGCCCTTGATTTCGATGGCGTCCTCTGCGACAGCTGTGGAGAGAGCTCCATCTCTGCCCTGAAGGCAGCAAAAGTCAAATGGCCTGAGCTTTTCACCGGAGTCGAACCCGAGACCGAAGATTGGATTCTTGATAGTATGCGCACAGTTCGACCAGTAGTTGAGACAGGATATGAGAATTTATTGCTTGTACGTCTGTTATTGGAATTGAAGAAACCCATGATCCAAAAGTCTTCGGTTGTACCTGGATTAACTGTAGAAAGAATACTGGAGAACTGGTCAAAGCTGAAACCTGTTATAATGATGGAGTGGGGTGAAAGCAGTGAAGAACTAGTAGAGCTTTTTGGAAAAGTCAGGGATGAATGGTTGGACCACGATCTCTCAGGCTGGATTGGAGCTAACAGATTCTATCCGGGGACTGCGGATGCACTTAGGTTTGCAAGCTCGAAAGTATATATTGTCACAACTAAACAGGCTAGGTTCGCAGAGGCCCTTCTGCAGAAACTGGCTGGAGTGAGTATTCCGCCCGAGAGGATCTATGGTCTAGGAACAGGGCCAAAGGTTGAGGTGCTGAAGCAACTTCAAAGCAAACCTGAACATTCTGGGCTGACACTGCACTTTGTTGAGGATCGGGTTGCAACTCTGAAGAATGTGATTAAGGAACCACAGCTGGATAAATGGAATCTCTATCTTGGCACTTGGGGCTACAATACTCCAAGTGAACGGGAAGAAGCAAATACAATTTCTCGCATCAATCTTGTTGATCTCCATGATTTCTGTGCAAAACTGAAGTGCGAACCTCCCAAGTTAGAGGAGAAGAACAGGAGTATTTAA___CACGGAATAAAATCTCAACATAGGGATATACCAGTGGTAGTAATACTTGCAAGTTGCAATTATGATGGACATCACATAAATAACAACCACATGACAGAGAGGGCCAACAAGGCATGACACCAAAACTATTTGTGATGTTAGTACCAGAGTGAGGGAGATGCTATCACATCAAACCTGGGTCTTGCTTGTCAATGCCAGGTTTTGGACTGGCAATAAGTGTGGAGTTATGTTTGAACTTGAAGTTTTGACCAGCTCAAACTTACG

Fln Alignment:

sp_v1.1_unigene25933___MGSLYALDFDGVLCDSCGESSISALKAAKVKWPELFTGVEPETEDWILDSMRTVRPVVETGYENXXXXXXXXXXKKPMIQKSSVVPGLTVERILENWSKLKPVIMMEWGESSEELVELFGKVRDEWLDHDLSGWIGANRFYPGTADALRFASSKVYIVTTKQARFAEALLQKLAGVSIPPERIYGLGTGPKVEVLKQLQSKPEHSGLTLHFVEDRVATLKNVIKEPQLDKWNLYLGTWGYNTPSEREEANTISRINLVDLHDFCA
B8LMA0_______________MGSLYALDFDGVLCDSCGESSVSAFKAAKVKWPQLFIGVEPETEEWILDNMRTVRPVVETGYENLLLVRLLLELKKPTIRKSSVVPGLTVEGILENWSKLKPVIMMEWGESSEELVELFGKVRDEWLEHDLSSWIGANRFYPGTADALRFASSTVYIVTTKQARFAEALLQKLAGVSIPPDRIYGLGTGPKVEVLKELQNKPEHSELTLHFVEDRLATLKNVIKEPQLDKWNLYLGTWGYNTPSEREEANTFSRINLVDLPDFCA

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
99	66		33		0.997452
100	66		33		0.997452
101			33	66	0.997452
102			33	66	0.997452
124	33		66		0.997452
168	33		66		0.997452
504	90		10		0.90298
637		22		77	0.999999
712		88		11	0.923564
1115	72		27		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain