SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25930

Length: 1537 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25930

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=B9FZ51_ORYSJ	-	-	1.00053e-42	78%
FL-Next	sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	79%
Blast2go	dna-directed rna polymerase	-	-	7.28675e-44	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	7.28675e-44	90%
Blast2go	transferase activity	GO:0016740	Molecular Function	7.28675e-44	90%
Blast2go	vacuole	GO:0005773	Cellular Component	7.28675e-44	90%
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	7.28675e-44	90%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P18616

Fln msg: your sequence is shorter than subject: 423 - 1839

Fln protein: FEETVDILLDAAVYAEGDPLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGVDFGMSPTRSPITGTPHHDAMMSPSYLLSPSLRSSPITDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPGYSPTSPSYSPTSPSYNPASPKYSPTSPAYSPSSPRYSPSSPYSPTSPNYNSPNSPSYSPTSPSFSQASPTYSPTSPPYSPASPAFSPSSPQYSPSGGYSPTAPGYSPSSTSQYTPQFSNKDEGSTR*

Protein Length: 424

Fln nts: TTTGAGGAGACGGTGGATATCCTTTTGGATGCTGCTGTTTATGCTGAAGGTGACCCTCTTAGGGGTGTTACAGAAAACATCATGCTTGGCCAGTTGGCTCCTATTGGGACAGGTGATTGTGCCTTGTATTTGAATGACCAAATGCTGCAACAGGCTATTGAACTCCAGTTACCCAGCTATATGGAAGGTGTAGACTTCGGTATGTCACCAACTAGGTCTCCTATCACTGGGACACCACATCATGATGCCATGATGTCTCCAAGCTATTTGCTTAGTCCCAGCCTACGTAGCTCACCTATTACAGATGCACAATTTTCTCCATATGTTGGGGGAATGGCCTTCTCTCCATCCTCTTCCCCTGGCTACAGCCCTTCGTCACCAGGGTACAGTCCCTCATCTCCTGGATATAGTCCCACATCGCCTGGTTACAGTCCCACATCTCCAGGATATAGCCCTACATCCCCGGGATATAGTCCTACTTCTCCTTCATATAGTCCAAGCTCTCCTGGATATAGTCCTACTTCTCCAGCATATTCACCTACAAGTCCTTCTTATTCTCCTACATCACCAAGTTATAGTCCCACATCACCAAGCTACAGCCCCACTTCACCAAGCTATAGCCCAACATCCCCAAGTTACAGCCCCACTTCACCTAGTTACAGCCCAACTTCACCTGTTTACAGTCCCACATCCCCAGCGTACAGCCCCACCTCACCGGCATACAGTCCCACATCACCTTCATATAGCCCCACGTCACCTTCATATAGCCCAACATCTCCCGCTTACAGTCCAACATCTCCGGCATACAGCCCGACTTCCCCGGCCTACAGCCCAACATCTCCTAGTTACAGCCCAACATCGCCAAGTTACAGCCCGACATCTCCTGGCTATAGTCCCACATCCCCAAGCTATAGCCCAACATCTCCAAGTTACAATCCAGCTTCTCCAAAGTACAGTCCTACTTCTCCAGCCTATTCTCCAAGTAGTCCAAGATATTCACCATCAAGTCCATATAGTCCAACATCACCAAATTACAACAGTCCAAATTCACCTTCTTATTCGCCAACATCTCCATCATTTTCTCAAGCAAGTCCTACTTACAGTCCTACAAGCCCTCCATATTCTCCAGCAAGTCCTGCATTCAGTCCCAGTTCACCTCAGTATAGTCCCAGTGGTGGCTATTCTCCAACTGCACCTGGCTATTCTCCATCCTCAACAAGCCAATACACTCCACAATTCAGCAACAAAGATGAGGGAAGTACTCGGTGA___TCATCACCAGCGGAGTTTACTAGCTTTTAGTTTCACCCTGAATCTAAATTTTTCTGGGCAAAAACATGGATGTGCAACAATTTCATGGTGTGGTAGAATTATATCTTGTCAGATGGACTTTGTATTTAGCAGTATTCTACTTTCATGACTGTAAGAACATTGCACTTTTCAAAACTCATTTTTACAGAAAATTCAAAATGTAGGGTACAAAGAAAATACGACGATCAGAACTAAAAAATGGAATTTAGAATTTCCATTTGTTTACAAT

Fln Alignment:

sp_v1.1_unigene25930___FEETVDILLDAAVYAEGDPLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGVDFGMSPTRSPITGTPHHDAMMXXXXXXXXXXXXXXITDAQFSPYVGGMAF
P18616_______________FEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGTPYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAF

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
789	12		87		0.992554
1037	85		14		0.993533
1038	85			14	0.993533
1040	85			14	0.993533
1042	14			85	0.993533
1045	83		16		0.994512
1046	83		16		0.994512
1047	83	16			0.994512
1116		88	11		0.923564
1119		88	11		0.923564
1120	88			11	0.923564
1121			11	88	0.923564
1123		11		88	0.923564
1125		88		11	0.923564
1126			11	88	0.923564
1127		88	11		0.923564
1129	88			11	0.923564
1131		88		11	0.923564
1132	88	11			0.923564
1134		11	88		0.923564
1137	11	88			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain