SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25926

Length: 1245 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25926

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[J] COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins	-	-	1.0e-22	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	protein	-	-	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Translation initiation factor SUI1	IPR001950	-	0.0	85%
Blast2go	Density-regulated protein DRP1	IPR005873	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NME9

Fln msg:

Fln protein: MAEKPRPVQVLYCAVCSLPAEYCEFGPDFEKCKPWIIQNAPHLYPDLVKADKETEKTGEKLQGMQISGDQADSTASAGSESKQEEVKRLPGGKIKKKEKPEVVVEKVVRNKRKCVTIVKGLDMFGIKLSDASKKLGKKFASGASVVKGPTEKEQIDVQGDILYDIVEFITETWPNVPENAIYFIEDGRKVPAV*

Protein Length: 195

Fln nts: ATGGGAGATGATTCGATGCCACTACCTTTCCACTCCACTAAATTCATGATATGATAAAACGAGATTGTTCCTTTTTCCGGACAATAAAACGATTGTTACTTGCTCTCATTATCGTTTTCCGTTAGGTGCATTGACACATATATCGGGGTAAAACCAAATTGCTTACCTGCTATTATTAAAACCTCTTCCTTGTCTTTGAAAGTTCAAATTCGAAGAAGAAGGGTTATATTAGTCAAAGCAGAAGAAGAA_-_ATGGCGGAGAAACCACGACCAGTGCAAGTGTTGTACTGTGCAGTCTGCAGCTTGCCAGCCGAATACTGTGAATTCGGCCCTGATTTTGAAAAATGCAAACCTTGGATAATCCAAAATGCCCCTCATTTGTATCCGGATCTCGTTAAAGCTGACAAGGAAACCGAGAAGACTGGAGAGAAGCTTCAAGGCATGCAAATTTCGGGTGATCAGGCCGATTCAACTGCATCTGCAGGAAGTGAATCAAAGCAAGAAGAAGTAAAACGATTACCAGGCGGGAAGATAAAGAAGAAGGAAAAGCCAGAGGTTGTAGTTGAGAAGGTTGTTCGAAATAAGCGCAAATGTGTTACCATTGTGAAAGGCCTTGATATGTTTGGAATTAAATTGAGTGATGCTTCAAAAAAACTGGGGAAGAAGTTTGCAAGTGGAGCATCAGTAGTTAAGGGTCCAACTGAAAAAGAACAGATTGATGTTCAAGGAGACATCTTGTATGATATCGTGGAATTCATCACTGAAACATGGCCAAATGTACCTGAAAACGCTATTTATTTCATTGAAGATGGAAGAAAAGTTCCTGCTGTGTGA___TAATTGACATTTTGGATTTGATCTGCTGCTATTAATTGTTTTTGTAATTAGAGGCATCATAGTTCATTCTGTTTTAATGCAAAAGTTTTGCAACTGATTTGTAACACAATGGCATTCAGTGTGTTAAATGATATAGAGGTACTTAGTTTTGGCATTGCCCTTTTTATCAGATCTAAAATTCTGCCTAGATATTCGTGTTTTTATCCATATTCTCTGCAGTCCACTGTGTTATAATTCTGAAAATTCTGTTTGAAGTAGCAGGGTTATTTTGATGAGAGTATCAAGCTGTGCATTCTTTGTACAAACTTTTGAATCTAAATTTAGTTGGCTTTATACTTGTGCAGAATTATTGCATTATGAACAAACAGTAGCTCTGGTATTTTTGAATTGTGTAAATAATATACCCATGTTTGG

Fln Alignment:

sp_v1.1_unigene25926___MAEKPRPVQVLYCAVCSLPAEYCEFGPDFEKCKPWIIQNAPHLYPDLVKADKETEKTGEKLQGMQISGDQADSTASAGSESKQEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIVKGLDMFGIKLSDASKKLGKKFASGASVVKGPTEKEQIDVQGDILYDIVEFITETWPNVPENAIYFIEDGRKVPA
A9NME9_______________MAEKPRPVQVLYCAVCTLPAEYCEFGPDFEKCKPWVIQNAPHLYPDLVKADKEAEKTGEKLQGMQISGDQADSTAPAGSVSKQEEVKRLPGGKIKKKEKPEVVVEKVVRNKRKCVTIVKGLDMFGIKLSDASKKLGKKFASGASVVKGPTEKEQIDVQGDILYDIVEFITETWPNVPENAIYFIEDGRKVPA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
875	92		7		0.999602
876	92	7			0.999602
879		7	92		0.999664
880	7			84	0.99801
1015		10		89	0.999919

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain