SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25925

Length: 610 nt

Origin of reads: Biogeco_1 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene25925 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dual specificity protein phosphatase, putative (EC:3.1.3.16); K14165 dual specificity phosphatase [EC:3.1.3.16 3.1.3.48]	-	-	2.0e-19	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	dual specificity protein phosphatase	-	-	2.39849e-26	73%

Source	ECs	Term	Type	e value	Identity
AutoFact	Phosphoprotein phosphatase.	EC:3.1.3.16	-	2.0e-19	57%
AutoFact	Protein-tyrosine-phosphatase.	EC:3.1.3.48	-	2.0e-19	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	2.39849e-26	73%
Blast2go	response to ozone	GO:0010193	Biological Process	2.39849e-26	73%
Blast2go	negative regulation of MAP kinase activity	GO:0043407	Biological Process	2.39849e-26	73%
Blast2go	response to stress	GO:0006950	Biological Process	2.39849e-26	73%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	2.39849e-26	73%
Blast2go	protein tyrosine/serine/threonine phosphatase activity	GO:0008138	Molecular Function	2.39849e-26	73%
Blast2go	MAP kinase phosphatase activity	GO:0033549	Molecular Function	2.39849e-26	73%
Blast2go	nucleus	GO:0005634	Cellular Component	2.39849e-26	73%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
190		66	33		0.997452
211	25			75	0.996473
264	85	14			0.993533
267			85	14	0.993533
285		16		83	0.994512
310		20	80		0.995493
323		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain