SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25908

Length: 1025 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25908

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Small zinc finger-like protein n=2 Tax=Pinaceae RepID=Q9XH47_PINTA	-	-	3.0e-40	97%
FL-Next	tr=Small zinc finger-like protein; Pinus taeda (Loblolly pine).	-	-	0.0	97%
Blast2go	mitochondrial import inner membrane translocase subunit tim10	-	-	4.69193e-40	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	transport	GO:0006810	Biological Process	4.69193e-40	91%
Blast2go	mitochondrial intermembrane space	GO:0005758	Cellular Component	4.69193e-40	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mitochondrial inner membrane translocase complex, Tim8/9/10/13-zinc finger-like	IPR004217	-	4.69193e-40	91%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
38	33	66			0.997452
57		50	50		1.0
60	75		25		0.996473
61	25		75		0.996473
69		25		75	0.996473
78	75		25		0.996473
100	16	83			0.994512
102			16	83	0.994512
103		83	16		0.994512
105			16	83	0.994512
113	83		16		0.994512
290		90		10	0.90298
310		50		50	1.0
873			62	37	1.0
877	90		9		1.0
913	76		24		1.0
930		14		85	1.0
938			83	16	0.994512
939			83	16	0.994512
967		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain