SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25904

Length: 2531 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene25904
AAAAAATGGGTCAAGCAATTGACCAGGGAAAAAGGTTACACTGAACAGATGGTAGAAGAATCAAATGCAAAAGTGTTTACATTTGGTTCTTATCGCTTGGGGGTTCATGGCCCGGGTGCTGACATTGACACATTGTGTGTTGGGCCTGAGTATGCAGATCGGGAGGAAGATTTTTTCATTCTTCTTCATGACATGTTGGCTGAGATGCCTGAAGTTACAGAACTGAATCGTGTTCCAGATGCTCATGTACCTGTTATGAAATTTAAGTTCAGAGGGATATCTATTGATTTGATCTATGCTAGCATATCACTTTGGGTTGTTCCTGAAGATTTTGATATCTCTCAGGAGTCAGTACTTTGTGATGTTGATGAACAAAGTGCAAGGAGCCTCAATGGATGCAGAGTTGCAGATCAGATCTTGCGCCTTGTACCCAATGTTGACCATTTTCGTACAACACTCAGATGCATGAAGCTCTGGGCTAAAAGGCGCGGTCTCTACTCAAATGTCACGGGTTTTTTGGGTGGTGTGAATTGGGCTTTATTAGTTGCTCGGATTTGTCAACTGTATCCAAATGCAATTCCCAGTATGTTGGTTTCGCGATTCTTTAGAGTCTATACACAATGGCGATGGCCAAATCCTGTGATGCTTTGTTCGATAGAGGAGGGTACCCTGGGATTTCCTGTATGGGATCCACGAAAGAACCCTCGTGATCGGACACATCATATGCCCATTATAACTCCTGCTTATCCGTGCATGAACTCCAGTTATAATGTATCTACGAGTACACTTCGTGTCATGACAGAGCAATTTCAGACTGGAAACAAGATTTGTGAGGATATTGAGATGAACAAGGCAGGCTGGGATGCTCTTTTTGAGTCTTATCCTTTCTTTGAGTCATACAGAAATTATTTGCAAATAGACATCGTAGCTGCAGATCAAGATGATTTGAGGACGTGGAAAGGATGGGTTGAGTCACGATTAAGGCAACTTACTTTGAAGATTGAACGAGACACATTTGGGATGCTGCAGTGTCATCCTTACCCTTGTGAATATAGCAACACATCTAGTCAAGGATATCATTGTGCATATTTTATGGGTTTACAAAGGAAACAAGGAGTGCCAATACAGGAAGGTCAACAGTTTGACATACGTGGCACTGTAGACGAATTCAGGCACTCAGTGATCATGTATTTTCTTTGGAGACCAGGAATGGACATCTTTGTATCACATGTACGTCGAAAACAAATTCCACCATATGTCTTTCCTGGAGGGGTATTACCTAGTCGACCTGCAAGAGGTGCGAATCAAACAGTAAAGGCTTCTCCAGGGAGTAGTAGTGGAAATTCTGGCGATGAATCTCCAGAACAGTGCAGCAACAAGTCATCTGTGAAACTGAACAAGAGAAAACATGAAACTGCAGGGAACATTGACAAAGGAGACAAAAAACCTGCTATTAGGTCAAATCGTGTGGTAGCTTGTTTAGGAGCAATGGAAGGTAGTCCATGTCGAGGCAATATAGCTGAAGAAGCAGTTTCTCAGAGGGTAACTGATGGTGATGTACAAAGCCGTCTGAAACAAAAAGTTTCTAAGGTCCTGGGTAGTGCTAGAACCATAGACACAGTTTCTGGCAAAACTTCAACAGAAGGATCATTGGGAAATGTCACTGCAATGAGAGCTGAAAATTTCCAAAATGGGCGGAAGGTGGAGCACTCGGTGTCACTTGGAACGATCTTGGCAGTTCAGGCAGGATCAAAAAACGATGCCGTTGGTAAGTCAGTCAGAAGGGTTACTCTTGCTTCGAGAGCATGATGGTTAAAGGAATCTGCTTTAAACTTTGAAGGCCACTTCCAGTTACCTGGTCATCGGATTTTGATCTCATTGATTCTATTCAATCTTCAGACTGACATCTTATTCAAACATTTGCATTTTCATAGAAAAACCTGTAAGTGATTCCTTTGTTTTTAATTTTTCTTCCTTAAGATAGATAATTACCGTGTCTGAAGAGGGAGTGAGACTGGTCTCGGGGGAATTCTCGATATGATGGCAAAACGGAAGGGATGAAAGAAGTCCTGTGGAGTAAGGTTTATATGAATGATGCAGGTCTGAACAAAACCCTTGGGATACCTTCATTTCTTCATTTGTAAGCATGCCTTTGCATGTAGTCATAGTTGCTGATACTTTGGCATGTCTTAGTGCTCCTTCAGATTTTCCAAATGTACAGTGATCTTTTCTGCTGCAGATGCTGCAGGTAACTCCTCCAGTGTGTTGAGAAAGAATGGTTATTCTGCGGAGAGTTATCATCATTTAGCCACTTCCAAGTGCAGTACATCTGTTGTGCTAAAGACATAGGTTGCTGTTTTTAGGTGTACACTATAGTCTCATTAGGTCGGGGGGCGAGGGGGGTCCGCATTGAAGAGGTTCAACTATTCTAGTATCTATTGAGGATAATTTCGAGATTCTGGTTATAGACGGTTATGTAGTACCTCCCTGGATGTTATAAACTAATTGGCCGAACTTGATGTAATATACAA

Ace file of the UniGene sp_v1.1_unigene25904

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Poly(A) polymerase beta, putative (EC:2.7.7.19)	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	npap (nuclear poly polymerase) nucleotidyltransferase protein binding	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	RNA polyadenylation	GO:0043631	Biological Process	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Blast2go	Nucleotidyl transferase domain	IPR002934	-	78%
Blast2go	Poly(A) polymerase, RNA-binding domain	IPR007010	-	78%
Blast2go	Poly(A) polymerase, central domain	IPR007012	-	78%
Blast2go	Nucleotidyltransferase, class I, C-terminal-like	IPR011068	-	78%
Blast2go	Poly(A) polymerase	IPR014492	-	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ25

Fln msg: your sequence is shorter than subject: 603 - 701

Fln protein: KKWVKQLTREKGYTEQMVEESNAKVFTFGSYRLGVHGPGADIDTLCVGPEYADREEDFFILLHDMLAEMPEVTELNRVPDAHVPVMKFKFRGISIDLIYASISLWVVPEDFDISQESVLCDVDEQSARSLNGCRVADQILRLVPNVDHFRTTLRCMKLWAKRRGLYSNVTGFLGGVNWALLVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEEGTLGFPVWDPRKNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMTEQFQTGNKICEDIEMNKAGWDALFESYPFFESYRNYLQIDIVAADQDDLRTWKGWVESRLRQLTLKIERDTFGMLQCHPYPCEYSNTSSQGYHCAYFMGLQRKQGVPIQEGQQFDIRGTVDEFRHSVIMYFLWRPGMDIFVSHVRRKQIPPYVFPGGVLPSRPARGANQTVKASPGSSSGNSGDESPEQCSNKSSVKLNKRKHETAGNIDKGDKKPAIRSNRVVACLGAMEGSPCRGNIAEEAVSQRVTDGDVQSRLKQKVSKVLGSARTIDTVSGKTSTEGSLGNVTAMRAENFQNGRKVEHSVSLGTILAVQAGSKNDAVGKSVRRVTLASRA*

Protein Length: 604

Fln nts: AAAAAATGGGTCAAGCAATTGACCAGGGAAAAAGGTTACACTGAACAGATGGTAGAAGAATCAAATGCAAAAGTGTTTACATTTGGTTCTTATCGCTTGGGGGTTCATGGCCCGGGTGCTGACATTGACACATTGTGTGTTGGGCCTGAGTATGCAGATCGGGAGGAAGATTTTTTCATTCTTCTTCATGACATGTTGGCTGAGATGCCTGAAGTTACAGAACTGAATCGTGTTCCAGATGCTCATGTACCTGTTATGAAATTTAAGTTCAGAGGGATATCTATTGATTTGATCTATGCTAGCATATCACTTTGGGTTGTTCCTGAAGATTTTGATATCTCTCAGGAGTCAGTACTTTGTGATGTTGATGAACAAAGTGCAAGGAGCCTCAATGGATGCAGAGTTGCAGATCAGATCTTGCGCCTTGTACCCAATGTTGACCATTTTCGTACAACACTCAGATGCATGAAGCTCTGGGCTAAAAGGCGCGGTCTCTACTCAAATGTCACGGGTTTTTTGGGTGGTGTGAATTGGGCTTTATTAGTTGCTCGGATTTGTCAACTGTATCCAAATGCAATTCCCAGTATGTTGGTTTCGCGATTCTTTAGAGTCTATACACAATGGCGATGGCCAAATCCTGTGATGCTTTGTTCGATAGAGGAGGGTACCCTGGGATTTCCTGTATGGGATCCACGAAAGAACCCTCGTGATCGGACACATCATATGCCCATTATAACTCCTGCTTATCCGTGCATGAACTCCAGTTATAATGTATCTACGAGTACACTTCGTGTCATGACAGAGCAATTTCAGACTGGAAACAAGATTTGTGAGGATATTGAGATGAACAAGGCAGGCTGGGATGCTCTTTTTGAGTCTTATCCTTTCTTTGAGTCATACAGAAATTATTTGCAAATAGACATCGTAGCTGCAGATCAAGATGATTTGAGGACGTGGAAAGGATGGGTTGAGTCACGATTAAGGCAACTTACTTTGAAGATTGAACGAGACACATTTGGGATGCTGCAGTGTCATCCTTACCCTTGTGAATATAGCAACACATCTAGTCAAGGATATCATTGTGCATATTTTATGGGTTTACAAAGGAAACAAGGAGTGCCAATACAGGAAGGTCAACAGTTTGACATACGTGGCACTGTAGACGAATTCAGGCACTCAGTGATCATGTATTTTCTTTGGAGACCAGGAATGGACATCTTTGTATCACATGTACGTCGAAAACAAATTCCACCATATGTCTTTCCTGGAGGGGTATTACCTAGTCGACCTGCAAGAGGTGCGAATCAAACAGTAAAGGCTTCTCCAGGGAGTAGTAGTGGAAATTCTGGCGATGAATCTCCAGAACAGTGCAGCAACAAGTCATCTGTGAAACTGAACAAGAGAAAACATGAAACTGCAGGGAACATTGACAAAGGAGACAAAAAACCTGCTATTAGGTCAAATCGTGTGGTAGCTTGTTTAGGAGCAATGGAAGGTAGTCCATGTCGAGGCAATATAGCTGAAGAAGCAGTTTCTCAGAGGGTAACTGATGGTGATGTACAAAGCCGTCTGAAACAAAAAGTTTCTAAGGTCCTGGGTAGTGCTAGAACCATAGACACAGTTTCTGGCAAAACTTCAACAGAAGGATCATTGGGAAATGTCACTGCAATGAGAGCTGAAAATTTCCAAAATGGGCGGAAGGTGGAGCACTCGGTGTCACTTGGAACGATCTTGGCAGTTCAGGCAGGATCAAAAAACGATGCCGTTGGTAAGTCAGTCAGAAGGGTTACTCTTGCTTCGAGAGCATGA___TGGTTAAAGGAATCTGCTTTAAACTTTGAAGGCCACTTCCAGTTACCTGGTCATCGGATTTTGATCTCATTGATTCTATTCAATCTTCAGACTGACATCTTATTCAAACATTTGCATTTTCATAGAAAAACCTGTAAGTGATTCCTTTGTTTTTAATTTTTCTTCCTTAAGATAGATAATTACCGTGTCTGAAGAGGGAGTGAGACTGGTCTCGGGGGAATTCTCGATATGATGGCAAAACGGAAGGGATGAAAGAAGTCCTGTGGAGTAAGGTTTATATGAATGATGCAGGTCTGAACAAAACCCTTGGGATACCTTCATTTCTTCATTTGTAAGCATGCCTTTGCATGTAGTCATAGTTGCTGATACTTTGGCATGTCTTAGTGCTCCTTCAGATTTTCCAAATGTACAGTGATCTTTTCTGCTGCAGATGCTGCAGGTAACTCCTCCAGTGTGTTGAGAAAGAATGGTTATTCTGCGGAGAGTTATCATCATTTAGCCACTTCCAAGTGCAGTACATCTGTTGTGCTAAAGACATAGGTTGCTGTTTTTAGGTGTACACTATAGTCTCATTAGGTCGGGGGGCGAGGGGGGTCCGCATTGAAGAGGTTCAACTATTCTAGTATCTATTGAGGATAATTTCGAGATTCTGGTTATAGACGGTTATGTAGTACCTCCCTGGATGTTATAAACTAATTGGCCGAACTTGATGTAATATACAA

Fln Alignment:

sp_v1.1_unigene25904___KKWVKQLTREKGYTEQMVEESNAKVFTFGSYRLGVHGPGADIDTLCVGPEYADREEDFFILLHDMLAEMPEVTELNRVPDAHVPVMKFKFRGISIDLIYASISLWVVPEDFDISQESVLCDVDEQSARSLNGCRVADQILRLVPNVDHFRTTLRCMKLWAKRRGLYSNVTGFLGGVNWALLVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEEGTLGFPVWDPRKNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMTEQFQTGNKICEDIEMNKAGWDALFESYPFFESYRNYLQIDIVAADQDDLRTWKGWVESRLRQLTLKIERDTFGMLQCHPYPCEYSNTSSQGYHCAYFMGLQRKQGVPIQEGQQFDIRGTVDEFRHSVIMYFLWRPGMDIFVSHVRRKQIPPYVFPGGVLPSRPARGANQTVK-------ASPGSSSGNSGDESPEQCSNKSSVKLNKRKHETAGNIDKGDKKPAIRSNRV------VACLGAMEGSPCRGNIAEE-----------AVSQRVTDGDVQSRLKQKVSKVLGSARTI---DTVSGKTSTEGSLGNVTAMRAENFQNG-RKVEHSVSLGTILAVQAGSKNDAVGKSVRRVTLASRA
C0PQ25_______________KQWVKQLTREKGYTEQMVEESNAKVFTFGSYRLGVHGPGADIDTLCVGPEYADQEEDFFILLHDMLAEMPEVMELNRVPDAHVPVMKFKFRGISIDLLYASVALRIVPDDLDISQESVLYNVDEQTVRSLNGCRVNEQILRLVPNVEHFRTTLRCMKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVFTQWRWPNPVMLRSIKEEELGFPVWDPRKNPRDRTHHMPIITPAYPGMNSSYNVSTSTLRVMTEQFQQGNKMCEDIEMNKANWSALFDPYPFFEAYKNYLQVDIVAADQDDLRLWKGWVESRLRQLTLKIERDTFGMLQCHPYPTEYVDNSKQCPHCAFFMGLQRKQGVLIQEGQQFDIRGTVDEFRQSVGMYMFWKPGMDIYVSHVRRKQIPSYVFPEGVRRVRSGRAANQIGKTSPQGRESSPKCCNGNFGDDIVEECNANSAEKANKRKHDMTTDVGKAEKRAAVSPNDVKSASLSVSDVSNRSGLASQTSSAEEPDHSSSTAGYGAIAKPVEVGEKPSKGCVKNGDQLEQKRSFTQKESVEEIGSGKG-LQNSCILRAGKCQNGSEELESSINVEMILPSHAGVKSETVQKPVLRVSLASTA

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
2022		27		72	1.0
2072		12		87	0.999964
2122	87		9		1.0
2124	87	6	3		0.992016
2125	6	90		3	0.997073
2128		6		93	0.999153
2129	6	90	3		0.997073
2355		90		9	0.999872
2396		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain