SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25897

Length: 2122 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene25897
ACCGCTGATCCTGCCACGTGGTTCCCCATATATCGTTCGATACGGAATGCTGCGAAGAGTTAATCCGGATCGTTGATATATCGGACGGCTCGGGAGGCGCCCAGATCCCCCTCCGGCGAATGCGTGCGTCACAGCTTGGTTGGACTGGATTCCTTTTACCCCTTTACTTTTGATACTTTCCAGGTTCGTTTCTCAGAGTAGAATAGCAGAGTTTCATGAATAAGAGTCAGAACTTGCCGGCAATTTTCGGTTTTATGGATGCAATAACGAGTTTATCCCTTTCTTCAACCTGCGATTGCCATTTTGAGGTTTTCGCCGATCAATTTGCTTCCTGATGTTAGTGGTTTCGCTTCGTTTCTCAAATAATACGATTTATGTCGGTTTGACGCCTAAGAAATCCTTTTAAAGACTGGAAGATCACGTTAATCTGGCCTTTCTCTGCAAAATATTGGCTACAAAGATGATATTCAACTCCGTCAGCTACGTTGATTGCCTTGCTTGCTTTAATATGGTGCCAGATTGTATATAAAGTTTCAGCTCGAGCCATCATTCATTCTAAAAATCAGATTGGAAGTATTCAGAAACGATAAACTGCAAATTCAAGGCACTGATCTTGTGTATGGACTTCAGTACCATGCGTGGAACTTCATCCAGGTTTAAGCATATAATGAAATTGGGACTTGAAGATTTCAACTAAAATATTGCTATCTTCACTCTGGCTCATCAGCTGTTGTTACAAGGAAACACAAATTACGGCATTGCATAAAAGTTGAAACGGTCTATGACATGCCACAAGGTTCCCATCTCATAAAAGGATCATGAGTTATCTTAGTTCTATATTTTCTTCTAGGGATCCACAATGCATCAGCATCCCTGCCAGTGGTGGAGGTGTCAGTCAGAATCAGAAGTTCAGCTATGGATTTGCAAGCTCACCAGGGAAAAGATCTTCAATGGAAGACTTTTTTGAGACACAGATTTGTGAGGTTGATGGTCAAATGGTTGGCTTGTTTGGAGTCTTTGATGGTCATGGTGGTGCTCGAGCTGCAGAATACGTGAAACAGAAACTTTTTGCAAATTTGATAAGCCACCCAAAATTTATTAGTGATACAAAGCTGGCAATAGCTGATGCTTACAAACAAACAGACAAGGAATTTCTCAATACAGAAAATAGTCAACACAGAGATGCTGGGTCAACTGCATCAACTGCAGTTCTTGTAGGGGATCGATTGCTGGTTGCAAACGTTGGGGATTCGAGAGCTGTTATATGCAGGGCTGGAAAAGCTGTTGCTCTTTCTCGGGATCATAAACCAAATCAAACTGACGAGCGTCAACGAATTGAGGATGCTGGAGGATTTGTTATGTGGGCTGGTACATGGCGTGTTGGGGGGGTTCTTGCTGTTTCGCGTGCTTTCGGTGACAGACTTTTAAAGCAGTATGTTGTAGCTGAGCCAGAGATTCAGGAAGAGGTCGCTGATGAAAATGTTGAATTTCTTATTCTTGCGAGTGATGGATTGTGGGATGTTGTCTCTAACCAGGATGCAGTTGCAATGATTCAGTCTACTGAGGATCCAGAATTAGCTGCAAAAAAGCTTACAGAGGAAGCATATAAAAAAGGCAGTGCAGATAATATTACTTGTGTTGTAGTGCGATTTAACCATGGTTAACAGAGGCAATTAAAATTTTAACTGATGCAAAATCCACATTGCAAGAGCCTTGTATGCTACCAACCTTTTGTTGCTTGAAGTTTGTTGAAGGTGGCCTAGTTTCTTCATATTTGGTTAGATTGCATGCAAATTATGCGATATAATTCTACCTATTACAGTTATAATGCCAGTTGAATAGGTCAAGGTAAGTTGCACACGGTCTGCTGTTTAGATAAAAAAGGGCATGCTTGTCATAATATGTGAAAATTTTTCATACTGAATAAACATGCTTTTATAAATTGTTAAGTTTGTTTACCATTTTATTATGTTCATCAATATCAAGAAGCAATGCCTGGATTCAACTCCTGTCAAATAAGTGTATGGGTTAAATGGGCTTTATACCTGGGATTTTATATTATTTGTCAAAAAATATTCATTATAATTATGATCTTTGGATTGTTAATAATAATGAATAATTT

Ace file of the UniGene sp_v1.1_unigene25897

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable protein phosphatase 2C 59 n=3 Tax=Magnoliophyta RepID=P2C59_ARATH	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein phosphatase 2c	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	87%
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	87%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWY3

Fln msg:

Fln protein: MSYLSSIFSSRDPQCISIPASGGGVSQNQKFSYGFASSPGKRSSMEDFFETQICEVDGQMVGLFGVFDGHGGARAAEYVKQKLFANLISHPKFISDTKLAIADAYKQTDKEFLNTENSQHRDAGSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELAAKKLTEEAYKKGSADNITCVVVRFNHG*

Protein Length: 283

Fln nts: ACCGCTGATCCTGCCACGTGGTTCCCCATATATCGTTCGATACGGAATGCTGCGAAGAGTTAATCCGGATCGTTGATATATCGGACGGCTCGGGAGGCGCCCAGATCCCCCTCCGGCGAATGCGTGCGTCACAGCTTGGTTGGACTGGATTCCTTTTACCCCTTTACTTTTGATACTTTCCAGGTTCGTTTCTCAGAGTAGAATAGCAGAGTTTCATGAATAAGAGTCAGAACTTGCCGGCAATTTTCGGTTTTATGGATGCAATAACGAGTTTATCCCTTTCTTCAACCTGCGATTGCCATTTTGAGGTTTTCGCCGATCAATTTGCTTCCTGATGTTAGTGGTTTCGCTTCGTTTCTCAAATAATACGATTTATGTCGGTTTGACGCCTAAGAAATCCTTTTAAAGACTGGAAGATCACGTTAATCTGGCCTTTCTCTGCAAAATATTGGCTACAAAGATGATATTCAACTCCGTCAGCTACGTTGATTGCCTTGCTTGCTTTAATATGGTGCCAGATTGTATATAAAGTTTCAGCTCGAGCCATCATTCATTCTAAAAATCAGATTGGAAGTATTCAGAAACGATAAACTGCAAATTCAAGGCACTGATCTTGTGTATGGACTTCAGTACCATGCGTGGAACTTCATCCAGGTTTAAGCATATAATGAAATTGGGACTTGAAGATTTCAACTAAAATATTGCTATCTTCACTCTGGCTCATCAGCTGTTGTTACAAGGAAACACAAATTACGGCATTGCATAAAAGTTGAAACGGTCTATGACATGCCACAAGGTTCCCATCTCATAAAAGGATC_-_ATGAGTTATCTTAGTTCTATATTTTCTTCTAGGGATCCACAATGCATCAGCATCCCTGCCAGTGGTGGAGGTGTCAGTCAGAATCAGAAGTTCAGCTATGGATTTGCAAGCTCACCAGGGAAAAGATCTTCAATGGAAGACTTTTTTGAGACACAGATTTGTGAGGTTGATGGTCAAATGGTTGGCTTGTTTGGAGTCTTTGATGGTCATGGTGGTGCTCGAGCTGCAGAATACGTGAAACAGAAACTTTTTGCAAATTTGATAAGCCACCCAAAATTTATTAGTGATACAAAGCTGGCAATAGCTGATGCTTACAAACAAACAGACAAGGAATTTCTCAATACAGAAAATAGTCAACACAGAGATGCTGGGTCAACTGCATCAACTGCAGTTCTTGTAGGGGATCGATTGCTGGTTGCAAACGTTGGGGATTCGAGAGCTGTTATATGCAGGGCTGGAAAAGCTGTTGCTCTTTCTCGGGATCATAAACCAAATCAAACTGACGAGCGTCAACGAATTGAGGATGCTGGAGGATTTGTTATGTGGGCTGGTACATGGCGTGTTGGGGGGGTTCTTGCTGTTTCGCGTGCTTTCGGTGACAGACTTTTAAAGCAGTATGTTGTAGCTGAGCCAGAGATTCAGGAAGAGGTCGCTGATGAAAATGTTGAATTTCTTATTCTTGCGAGTGATGGATTGTGGGATGTTGTCTCTAACCAGGATGCAGTTGCAATGATTCAGTCTACTGAGGATCCAGAATTAGCTGCAAAAAAGCTTACAGAGGAAGCATATAAAAAAGGCAGTGCAGATAATATTACTTGTGTTGTAGTGCGATTTAACCATGGTTAA___CAGAGGCAATTAAAATTTTAACTGATGCAAAATCCACATTGCAAGAGCCTTGTATGCTACCAACCTTTTGTTGCTTGAAGTTTGTTGAAGGTGGCCTAGTTTCTTCATATTTGGTTAGATTGCATGCAAATTATGCGATATAATTCTACCTATTACAGTTATAATGCCAGTTGAATAGGTCAAGGTAAGTTGCACACGGTCTGCTGTTTAGATAAAAAAGGGCATGCTTGTCATAATATGTGAAAATTTTTCATACTGAATAAACATGCTTTTATAAATTGTTAAGTTTGTTTACCATTTTATTATGTTCATCAATATCAAGAAGCAATGCCTGGATTCAACTCCTGTCAAATAAGTGTATGGGTTAAATGGGCTTTATACCTGGGATTTTATATTATTTGTCAAAAAATATTCATTATAATTATGATCTTTGGATTGTTAATAATAATGAATAATTT

Fln Alignment:

sp_v1.1_unigene25897___MSYLSSIFSSRDPQCISIPASGGGVSQNQKFSYGFASSPGKRSSMEDFFETQICEVDGQMVGLFGVFDGHGGARAAEYVKQKLFANLISHPKFISDTKLAIADAYKQTDKEFLNTENSQHRDAGSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELAAKKLTEEAYKKGSADNITCVVVRFNHG
A9NWY3_______________MSYLSSIFSSRDPQCVSIPVSGGGVSQNQKFSYGYASSPGKRSSMEDFFDTQICEVDGQIVGLFGVFDGHGGARAAEYVKQKLFANLISHPKFISDTKLAIADAYKQTDKEFLNTENSQHRDAGSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELAAKKLTEEAYRKGSADNITCVVVRFSHG

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
183		25	50		0.995533
189	20			80	0.995493
191			20	80	0.995493
192		80	20		0.995493
193			20	80	0.995493
194		80	20		0.995493
198			83	16	0.994512
199			16	83	0.994512
200	83		16		0.994512
202	83		16		0.994512
225	78	14	7		0.999974
229	85			14	0.999981
232	85	14			0.999981
235		15		84	1.0
237		73	10	15	1.0
239			89	10	0.999919
241	15	73		10	1.0
242	73	26			1.0
243	84	15			1.0
245		10		89	0.999919
246			15	84	1.0
247		10	15	73	1.0
248	10	89			0.999919
249			84	15	1.0
252		15		84	1.0
254		15		84	1.0
834	57			42	1.0
835	57	42			1.0
1369		25	75		0.996473
1372	75		25		0.996473
1373	25	75			0.996473
1374	75	25			0.996473
1375		25		75	0.996473
1376			75	25	0.996473
1377			75	25	0.996473
1378		75	25		0.996473
1380		25		75	0.996473
1381			75	25	0.996473
1382			25	75	0.996473
1384		25	75		0.996473
1385	25		75		0.996473
1386		25	75		0.996473
1387			75	25	0.996473
1388		25	75		0.996473
1389	25		75		0.996473
1516		20		80	0.995493
1598	83		16		0.994512
1851	81			18	0.999994
1912	72			27	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain