SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25896

Length: 1086 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25896

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calmodulin-7 n=145 Tax=Eukaryota RepID=CALM7_ARATH	-	-	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	calmodulin	-	-	98%

Source	GOs	Term	Type	Identity
Blast2go	calcium-mediated signaling	GO:0019722	Biological Process	98%
Blast2go	regulation of photomorphogenesis	GO:0010099	Biological Process	98%
Blast2go	protein binding	GO:0005515	Molecular Function	98%

Source	InterPros	Term	Type	Identity
Blast2go	Calcium-binding EF-hand	IPR002048	-	98%
Blast2go	EF-hand-like domain	IPR011992	-	98%
Blast2go	EF-Hand 1, calcium-binding site	IPR018247	-	98%
Blast2go	EF-hand	IPR018248	-	98%
Blast2go	EF-HAND 2	IPR018249	-	98%

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
14	80		20		0.995493
15	80	20			0.995493
16	80			20	0.995493
17	80		20		0.995493
18		80		20	0.995493
21		20		80	0.995493
22	80			20	0.995493
264	90		10		0.999898
265			90	10	0.999898
266	90	10			0.999898
270	90	10			0.999898
272	90			10	0.999898
273			90	10	0.999898
274	90		10		0.999898
275			10	90	0.999898
278		90	10		0.999898
280		10	90		0.999898
282		10	90		0.999898
284		10		90	0.999898
285	10	90			0.999898
296	4			86	0.999642
515		11		66	0.999999
517		87	12		0.992554
518	12		87		0.992554
520	14		85		0.993533
521		14		85	0.993533
524			14	85	0.993533
773		6	93		0.999453
812	96		3		0.980996
815	96			3	0.980996
821	80	19			1.0
1049	87		12		0.992554
1050	12	87			0.992554
1052	14			71	0.984337
1054	14	85			0.993533
1055	16			83	0.994512
1056	16			83	0.994512
1082	33		66		0.997452
1083		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain