SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25886

Length: 1885 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25886

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ETO1-like protein 1 n=3 Tax=Arabidopsis RepID=ETOL1_ARATH	-	-	75%
FL-Next	sp=ETO1-like protein 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	77%
Blast2go	ethylene overproducer1-like protein	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of ethylene biosynthetic process	GO:0010364	Biological Process	0.0	85%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9ZQX6

Fln msg: your sequence is shorter than subject: 425 - 888

Fln protein: VRLGKSNSIGSNSYLSFYVPSCSINERAECTCCTDEINRVLSFKLTLDCLELRTCFYLALQDYRGALSDIQAILTLNPNYMMYGGRVGASQLRSLLIPHVEHWTTADCWMQLYDRWSSVDDIGSLAVIYQMLESDSGKSLLFFRQSLLLLRLNCPEAAMHSLQLARQHATCEHERLVYEGWILYDTGHCEEGLRKAEESIAIQRSFEAFFLKAYALADSSIDPASSVVIVSLLAEALKCPSDGLRKGQALNNLGSVYVDCGKLDLAADCYVNALKIRHTRAHQGLARVYYLKNDKIAAYEEMTKLIEKARNKASAYEKRSEYCDREMTMADLQMVTELDPLRVYPYRYRAAVLMDSHQEEEAIAELSRAIAFKADLHLLHLRAAFHECIGDVAGALRDCRAALSVDPNHQEIMELHSRVHSQEP*

Protein Length: 426

Fln nts: GGTTAGACTTGGAAAGAGCAACAGCATTGGATCCAACTCTTACCTATCCTTTTATGTACCGAGCTGCAGTATTAATGAGAGAGCAGAGTGCACATGCTGCACTGATGAAATCAATCGTGTTCTAAGTTTCAAGTTGACACTTGATTGCCTGGAGCTTCGAACTTGCTTTTACTTGGCCCTTCAAGATTATAGGGGTGCGTTGTCTGATATTCAAGCAATCTTAACTTTAAATCCAAACTATATGATGTATGGGGGTCGTGTGGGGGCTTCTCAATTGCGTAGTCTATTGATTCCACACGTGGAGCATTGGACAACTGCAGACTGCTGGATGCAGTTGTATGATCGATGGTCTTCTGTGGATGATATTGGGTCACTCGCTGTAATTTACCAAATGTTGGAGTCAGATTCTGGAAAGAGTCTACTTTTCTTCAGACAGTCACTTCTTCTGCTCAGGTTAAATTGCCCCGAAGCAGCAATGCACAGTCTTCAGTTGGCCCGCCAACATGCAACCTGTGAGCATGAGCGTCTGGTTTATGAGGGATGGATCCTTTATGATACAGGTCATTGTGAAGAGGGACTGCGGAAAGCAGAGGAATCAATTGCCATCCAAAGGTCATTTGAGGCCTTTTTTCTTAAAGCATATGCTTTGGCAGATTCCAGCATAGATCCAGCATCTTCCGTTGTCATTGTATCACTACTGGCAGAAGCTTTAAAGTGTCCTTCTGATGGGCTTCGCAAGGGCCAGGCATTGAATAATCTTGGTAGCGTTTATGTGGACTGTGGCAAGTTGGATCTAGCAGCAGATTGCTATGTGAATGCTCTTAAAATTCGTCACACTAGGGCTCACCAAGGCCTTGCTCGCGTGTACTATTTGAAAAATGATAAGATTGCTGCTTATGAAGAAATGACCAAGCTGATAGAGAAAGCTAGGAATAAGGCCTCGGCATATGAGAAGAGATCTGAATATTGTGATCGTGAGATGACAATGGCCGACTTGCAGATGGTCACTGAACTCGATCCACTCCGAGTTTACCCGTACAGATACCGTGCAGCTGTTCTGATGGATAGTCACCAAGAGGAAGAGGCTATTGCGGAACTTTCCAGGGCTATTGCATTCAAAGCTGACTTGCATCTTCTTCATCTCCGTGCTGCTTTTCATGAATGTATTGGGGATGTGGCTGGGGCTTTGAGGGACTGTCGTGCAGCACTTTCTGTGGACCCAAATCATCAGGAAATTATGGAGCTTCACAGTCGCGTGCACAGTCAAGAACCTTGA___GGTATCTTGTTAAATAGCAACGGGGTAAAAGGGTTGAAGACAGAGATTCCGTTCCATTGTACCATAATCAGAAGATTCAGAGTTTTTCTCCATTTTGCAGATTAGGTTTTTCTAAATCAATGCAGCAGATCATCTCCAGTATAGGTCAAGATGCTTTTTATATAACAGCCAGGGAATTCCATTACTTTTGCCAAAGTGCACAATGTGGCCTTTGTCAAGTCACTTGGTCTGGTGATTTTCAAAGTTCTTGTAGAGTAGCTCATAAATTCAGAATGAAACAATGGCATCACGTTGTTAACTATATATGTGAGATGAGCTGCAGTTCAGTAGATTCCCTTAAGTGTGCATTCGTCCTCATATGGCACCTCCATATAGTGTATGATTATGTCAGTGTCCGAGTTACCAGCACGAATCAAAATGAAAGTTTTATTCTGTTACTAGATTCATTTATCTAACATACTGTAGACTGTTAGGAATGCATGTAATTTTTGAAGCAAAAACTGCACATTTACATTGTTGCATCTTTGTTTCTTTTCCATGTGGCATGCGACGTGTTTTTATTATCCACCTTCTGTAGCTGCCTCTTGCGTTTATTTTGAATATCTTGCC

Fln Alignment:

sp_v1.1_unigene25886___DEINRVLSFKLTLDCLELRTCFYLALQDYRGALSDIQAILTLNPNYMMYGGRVGASQLRSLLIPHVEHWTTADCWMQLYDRWSSVDDIGSLAVIYQMLESDSGKXXXXXXXXXXXXXXNCPEAAMHSLQLARQHATCEHERLVYEGWILYDTGHCEEGLRKAEESIAIQRSFEAFFLKAYALADSSIDPASSVVIVSLLAEALKCPSDGLRKGQALNNLGSVYVDCGKLDLAADCYVNALKIRHTRAHQGLARVYYLKNDKIAAYEEMTKLIEKARNKASAYEKRSEYCDREMTMADLQMVTELDPLRVYPYRYRAAVLMDSHQEEEAIAELSRAIAFKADLHLLHLRAAFHECIGDVAGALRDCRAALSVDPNHQEIMELHSRVHSQEP
Q9ZQX6_______________EEINRILGFKLALECLEIRFCLYLGMDDYEAALRDIQAALTLCPDYRMFDGKVAGRQLQTLVYEHVENWTTADCWMQLYEKWSNVDDIGSLSVIYQMLESDACKGVLYFRQSLLLLRLNCPEAAMRSLQLAREHASSDHERLVYEGWILYDTGHCEEGLQKAKESIGIKRSFEAYFLQAYALAESSLDPSSSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCEKLDLAADCYINALKVRHTRAHQGLARVHFLRNDKAAAYEEMTRLIEKAQNNASAYEKRSEYCDRELAKSDLEMVTRLDPLRVYPYRYRAAVLMDSRKEREAITELSRAIAFKADLHLLHLRAAFHEHIGDVTSALRDCRAALSVDPNHQEMLELHSRVNSHEP

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
801	85		14		0.999981
997		30		70	1.0
1020	55			44	1.0
1025	22	44			1.0
1028	11			88	0.923564
1061			16	83	0.994512
1063		83	16		0.994512
1064	16			83	0.994512
1068	16		83		0.994512
1069	16		83		0.994512
1088	75		25		0.996473
1186		33		66	1.0
1317		11		88	0.923564
1319	88	11			0.923564
1320	77	11		11	0.968132
1321			88	11	0.923564
1322	88			11	0.923564
1324	77			22	0.999999
1325			88	11	0.923564
1326	77		11	11	0.968132
1327		11	88		0.923564
1328	88	11			0.923564
1329		11		88	0.923564
1332	10	90			0.90298
1333			90	10	0.90298
1334		10		90	0.90298
1338	90	10			0.90298
1343	90		10		0.90298
1345		90		10	0.90298
1346	90		10		0.90298
1349	90	10			0.90298
1376		11		88	0.923564
1402	36			63	1.0
1562	91		2		0.995912

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain