SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25869

Length: 1989 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene25869
GGGAGGGATCGATCCTCGTACGGGCTCTGTGTAAAGCTTCTGTTTTTTCTCAGCAGAAATGGATCCTTACAAGTACCGGCCGTCAAGCGCGTACAATTCTCCTTTCTGGACAACCAACTCCGGTGCCCCAGTGTGGAATAACAATTCCTCATTGACCATCGGCTCAAGAGGTCCTATCCTTTTGGAGGATTATCACCTGGTGGAGAAGATTGCACAGTTTGATAGGGAACGTGTGCCGGAGAGAGTTGTTCATGCGACAGGACCTAGGCCGAAACTCAGTTTTTTTGAGGTGACCCATGACATTTCTCATCTTACTTGCGCCGATTTCCTTCGGGCAGCCGGCGTACAGACCCCCCTGATCGTGCGTTTCTCAACTGTTATCCATGAGCGTGGGAGTCCTGAAACCCTCCGAGATCCTCGCGGGTTCGCTGTGAAATTCTACACCAGAGAGGGGAACTTCGATCTTGTTGGAAATAATTTTCCTGTATTCTTTGTTCGCGATGGTATGAAGTTTCCAGACATGGTTCATGCATTGAAACCAAATCCCAAAAGTCACATTCAAGAAGACTGGAGGATTCTAGATTTCTTCTCTCACCACCCAGAGAGTTTGCATATGTTCACCTTTCTCTTTGATGATCTCGGTATCCCTTTAAACTACAGGCATATGGATGGGTCTGGTGTCCACACTTTTGCCCTTGTTAATAAGGCTGGGAGGCAAACCTATGTGAAGTTTCATTGGAGGCCTACTTGTGGAGTTAAGTGTTTATTGGATGATGAAGCAGTTGTAGTAGGTGGGACAAACCACAGTCATGCAACCAAGGATCTCTATGATTCTATAGCAGCAGGCAACTATCCTGAATGGAAACTTTTTATCCAGACAATGGATCCCCGGGATGAGGATAAATATGACTTTGATCCTTTAGATGTTACGAAAACTTGGCCTGAGGATATCTTTCCTCTTCAACCTGTAGGACGCATGGTCTTGAACAAGAATATTGACAATTTCTTTGCTGAAAACGAGCAGCTTGCATTTGCTCCTGCTCTTGTTGTTCCTGGTGTCTATTACACTGAAGACAAGCTACTCCAAACAAGGATATTCTCATACACAGATACACAAAGGCATCGACTTGGACCCAACTATTTGATGCTGCCAGCCAATGCACCCAAGTGTGCACATCACAATAATCATCATGAGGGATTCATGAACTTCATGCACAGGGATGAAGAGGTCAACTACTTTCCATCAAGGTTTGATCCAGTTCGTCATGCTGAGAGATTTCCCATTCCTTCCCATACCCATACTGGCAAGCGGGAGAAGTGCGTGATAGAGAAGGAGAATAATTTCAAACAACCTGGAGAGCGATATCGTTCATTTGCACCAGAAAGGCAAGAGCGTTTTGTGAAGCGATGGGTGGCAGCTTTGTCAGATCCTAGGGTCACCCATGAAATTTGCAGTATTTGGATATCTTACTGGTCACAGTGTGACAAATCATTGGGTCAGAAGATAGCAGCTCGCCTTAACATGAAAGCAAATATGTAAGAAGTTCGAACTGCAGCATGCAATGTGGGATACGGCATTTTATAATAGGATGCTGCTGCTTGTTAATCTTTCTACATATATGAGGGGCAGGAGAAAGAGGAATTCTCTCTGTGAAGATAAAACTGCTTTTACTTTAGTACATAGTGCTAGTGGTTCATGAAATTGAAATTACAGCTGATGATTTATCAGTGATTGGACATCTGTTAGGTCCAGGGGATAGATACCTACTTATGAACTTTGACAGGTCTATTGTCATGATGTATTGGTATCATATATGGTCAAATTGAATAAATTCTGTTGAGAAATGTTTATATATGGTCAAATTGAATAAATTCTGTTGAGAAATGTTTATGAAAGAATATCGGTTATCAGCCTCGATAACAGGTAAATAAATAACCTTGGATCATAGCTCCGGCAAAAAGATATTCTTTGACCAGACTACTTAAGGG

Ace file of the UniGene sp_v1.1_unigene25869

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Catalase n=3 Tax=Pinaceae RepID=A9NUZ2_PICSI	-	-	95%
FL-Next	sp=Catalase; Pinus sylvestris (Scots pine).	-	-	97%
Blast2go	catalase	-	-	93%

Source	InterPros	Term	Type	Identity
Blast2go	Catalase haem-binding site	IPR002226	-	93%
Blast2go	Catalase immune-responsive domain	IPR010582	-	93%
Blast2go	Catalase core domain	IPR011614	-	93%
Blast2go	Catalase, mono-functional, haem-containing	IPR018028	-	93%
Blast2go	Catalase-like domain	IPR020835	-	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B1PYP2

Fln msg:

Fln protein: MDPYKYRPSSAYNSPFWTTNSGAPVWNNNSSLTIGSRGPILLEDYHLVEKIAQFDRERVPERVVHATGPRPKLSFFEVTHDISHLTCADFLRAAGVQTPLIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQEDWRILDFFSHHPESLHMFTFLFDDLGIPLNYRHMDGSGVHTFALVNKAGRQTYVKFHWRPTCGVKCLLDDEAVVVGGTNHSHATKDLYDSIAAGNYPEWKLFIQTMDPRDEDKYDFDPLDVTKTWPEDIFPLQPVGRMVLNKNIDNFFAENEQLAFAPALVVPGVYYTEDKLLQTRIFSYTDTQRHRLGPNYLMLPANAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRFDPVRHAERFPIPSHTHTGKREKCVIEKENNFKQPGERYRSFAPERQERFVKRWVAALSDPRVTHEICSIWISYWSQCDKSLGQKIAARLNMKANM*

Protein Length: 495

Fln nts: GGGAGGGATCGATCCTCGTACGGGCTCTGTGTAAAGCTTCTGTTTTTTCTCAGCAGAA_-_ATGGATCCTTACAAGTACCGGCCGTCAAGCGCGTACAATTCTCCTTTCTGGACAACCAACTCCGGTGCCCCAGTGTGGAATAACAATTCCTCATTGACCATCGGCTCAAGAGGTCCTATCCTTTTGGAGGATTATCACCTGGTGGAGAAGATTGCACAGTTTGATAGGGAACGTGTGCCGGAGAGAGTTGTTCATGCGACAGGACCTAGGCCGAAACTCAGTTTTTTTGAGGTGACCCATGACATTTCTCATCTTACTTGCGCCGATTTCCTTCGGGCAGCCGGCGTACAGACCCCCCTGATCGTGCGTTTCTCAACTGTTATCCATGAGCGTGGGAGTCCTGAAACCCTCCGAGATCCTCGCGGGTTCGCTGTGAAATTCTACACCAGAGAGGGGAACTTCGATCTTGTTGGAAATAATTTTCCTGTATTCTTTGTTCGCGATGGTATGAAGTTTCCAGACATGGTTCATGCATTGAAACCAAATCCCAAAAGTCACATTCAAGAAGACTGGAGGATTCTAGATTTCTTCTCTCACCACCCAGAGAGTTTGCATATGTTCACCTTTCTCTTTGATGATCTCGGTATCCCTTTAAACTACAGGCATATGGATGGGTCTGGTGTCCACACTTTTGCCCTTGTTAATAAGGCTGGGAGGCAAACCTATGTGAAGTTTCATTGGAGGCCTACTTGTGGAGTTAAGTGTTTATTGGATGATGAAGCAGTTGTAGTAGGTGGGACAAACCACAGTCATGCAACCAAGGATCTCTATGATTCTATAGCAGCAGGCAACTATCCTGAATGGAAACTTTTTATCCAGACAATGGATCCCCGGGATGAGGATAAATATGACTTTGATCCTTTAGATGTTACGAAAACTTGGCCTGAGGATATCTTTCCTCTTCAACCTGTAGGACGCATGGTCTTGAACAAGAATATTGACAATTTCTTTGCTGAAAACGAGCAGCTTGCATTTGCTCCTGCTCTTGTTGTTCCTGGTGTCTATTACACTGAAGACAAGCTACTCCAAACAAGGATATTCTCATACACAGATACACAAAGGCATCGACTTGGACCCAACTATTTGATGCTGCCAGCCAATGCACCCAAGTGTGCACATCACAATAATCATCATGAGGGATTCATGAACTTCATGCACAGGGATGAAGAGGTCAACTACTTTCCATCAAGGTTTGATCCAGTTCGTCATGCTGAGAGATTTCCCATTCCTTCCCATACCCATACTGGCAAGCGGGAGAAGTGCGTGATAGAGAAGGAGAATAATTTCAAACAACCTGGAGAGCGATATCGTTCATTTGCACCAGAAAGGCAAGAGCGTTTTGTGAAGCGATGGGTGGCAGCTTTGTCAGATCCTAGGGTCACCCATGAAATTTGCAGTATTTGGATATCTTACTGGTCACAGTGTGACAAATCATTGGGTCAGAAGATAGCAGCTCGCCTTAACATGAAAGCAAATATGTAA___GAAGTTCGAACTGCAGCATGCAATGTGGGATACGGCATTTTATAATAGGATGCTGCTGCTTGTTAATCTTTCTACATATATGAGGGGCAGGAGAAAGAGGAATTCTCTCTGTGAAGATAAAACTGCTTTTACTTTAGTACATAGTGCTAGTGGTTCATGAAATTGAAATTACAGCTGATGATTTATCAGTGATTGGACATCTGTTAGGTCCAGGGGATAGATACCTACTTATGAACTTTGACAGGTCTATTGTCATGATGTATTGGTATCATATATGGTCAAATTGAATAAATTCTGTTGAGAAATGTTTATATATGGTCAAATTGAATAAATTCTGTTGAGAAATGTTTATGAAAGAATATCGGTTATCAGCCTCGATAACAGGTAAATAAATAACCTTGGATCATAGCTCCGGCAAAAAGATATTCTTTGACCAGACTACTTAAGGG

Fln Alignment:

sp_v1.1_unigene25869___MDPYKYRPSSAYNSPFWTTNSGAPVWNNNSSLTIGSRGPILLEDYHLVEKIAQFDRERVPERVVHATGPRPKLSFFEVTHDISHLTCADFLRAAGVQTPLIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQEDWRILDFFSHHPESLHMFTFLFDDLGIPLNYRHMDGSGVHTFALVNKAGRQTYVKFHWRPTCGVKCLLDDEAVVVGGTNHSHATKDLYDSIAAGNYPEWKLFIQTMDPRDEDKYDFDPLDVTKTWPEDIFPLQPVGRMVLNKNIDNFFAENEQLAFAPALVVPGVYYTEDKLLQTRIFSYTDTQRHRLGPNYLMLPANAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRFDPVRHAERFPIPSHTHTGKREKCVIEKENNFKQPGERYRSFAPERQERFVKRWVAALSDPRVTHEICSIWISYWSQCDKSLGQKIAARLNMKANM
B1PYP2_______________MDPYKYRPSSAYNSPFWTTNAGAPVWNNNSSLTIGSRGPILLEDYHLVEKIAQFDRERVPERVVHARGASAK-GFFEVTHDISHLTCADFLRAAGVQTPLIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQEDWRILDFFSHHPESLHMFTFLFDDLGIPLNYRHMDGSGVHTFTLVNKAGRQTYVKFHWRPTCGVKCLLDDEAVVVGGTNHSHATKDLYDSIAAGNYPEWKLFIQTMDPRDEDKYDFDPLDVTKTWPEDIFPLQPVGRMVLNKNIDNFFAENEQLAFGPGLIVPGVYYTEDKLLQTRIFSYSDTQRHRLGPNYLMLPANAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRFDPVRHAERFPIPSHTHTGKREKCVIEKENNFKQPGERYRSFAPERQERFVKRWVAALSDPRVTHEICSIWISYWSQCDKSLGQKIAARLNMKANM

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
644	13			80	0.999961
702	80	20			0.995493
703	80		20		0.995493
704		20		80	0.995493
706	80			20	0.995493
708	20		80		0.995493
709		80	20		0.995493
712	25		75		0.996473
713		25	75		0.996473
718	75	25			0.996473
890		66		33	1.0
916	83		16		0.994512
932	72		18		0.999994
1168	80	20			0.995493
1174	20	80			0.995493
1175	80	20			0.995493
1177	80			20	0.995493
1179		80	20		0.995493
1180	80		20		0.995493
1182	80			20	0.995493
1183	80		20		0.995493
1185	80	20			0.995493
1622		5		94	1.0
1754	1		93		0.999969
1840		4		96	0.99411
1854	92		7		0.999602
1860		36		63	1.0
1870		10		90	0.90298
1883		16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain