SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25859

Length: 2721 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene25859
ATGGGGGCGTGTCTGGCATTTGTACACTGAGCTTCGCTTCTCTCCTCTGCTCTGCCCGTGCGTATGTTTTTAGTGTTTTTAGTGCAGAGGAAGGACTGAAGCCGAAGGTGCCTTTCAATTCACAGGTCTTTGTTATTCTTTTGAGATCTCGAGTGCATGGAGGGACAAATACGATCAGAAGCTCCGCGCGACGCCATTGTCGTCAGGTCCAGGGATCGATTCTTGCTGATCAAGTCATGAGAAACCAGGCATGGATTGTCATTGCACAGGTGGTTGGGTAAATGCTACACCAATTTGACCTGGTGGATGCCTTGGCTCAAAAGTGTGCTGTGCAAAATGTTGTGTACCTGTTCAAGGGAACAAGTTGGGGTAGAGGAAGGTGGTCTCTCCAAAGATGTGATGGCTTTCAAAGAGGTCTCTGCCAATGGACTCTCTGCTAAAACAACTGAGGTTGAAACGAAACTTGATGAAGGAAACATTGAAGAAGCCGAGTCTTCACTCCGTGAAGCATTATCTCTAAATTATGAGGAGGCTAGAGCTCTATTAGGAAGATTAGAGTATCAAAGAGGAAACATTCGAGGCTGCCTTGCAAGTATTCGAGGGAATTGAATTACATGCTGTAAAACAGCGCTTACGGTCGTCTATTTCAGAAAAAGCTCACTCTAAACGAGGTCGATCACGGCAAGAACTATCACAATCAGTTTCACTACATGCAGCCAGCCTATTGCTTGAGGCGATATACTTGAAGGCATTGTCACTGCAAAAGCTTGGTCGTCTAACAGAAGCTGCTCAAGAATGCAAAAGTGTTCTAGACACAATTGAAAACGCTTTTCCTCAGGGCATGCCTGAGTTGTTGGGAGACAACAAACTGCAAGAGACAGTTGGCAAGGCTGTTGAACTTCTACCAGAACTGTGGAAGCAAGCAGGTCTCCAGCATGAAGCAATGGCTGCATATAGACGGGCTCTCCTTAGTCAATGGCACCTTGATGCAGATTGTTGCGCAAGAATACAAAAGGAATTTGCTATATTGTTACTTTATGGGGGGGTTGAGGCAGGTGCACCTAGTTTAGCTGCTCAGATTGATGGTTCATTTGTCCCAAAGAATAATACAGAGGAGGCTATTCTATTGCTTATGATTCTCCTAAGAAAATGTTGTCTACGCAAAATTGCGTGGGATCCTGCAGTCATGGATCACCTTACTTTTGCACTTTCTCTTTCTGGACAATCCCTTGTAATAGCAAAGCAAGTTGAAGAGGTCTTACCTGGAATTTATGCAAGGTCTGATCGATGGAATGATCTGGCTCTTTGTTATAGTGGTGCGAGGCAAAATCTGGTTGCGTTAAATCTTCTAAGAAAGTCATTGAGCAAATCAGAAAAACCAAATGATTTGTCAGCATTGTTATTAGCAGCAAAGATTTGTACTGAAGATTTCCATCTTGCTGCTGAAGGAGTGGAATATGCAAGAAGAGCTGTGGAGAATGCCAAAGGGGAGTTTGAACACTTAAAGGGCATTGCATATCGTTTATTAGGTCTTGCATTGGAAAGGAAACTAAAGCTTCGTCTTCAGACTCAGAAAGAACCCGTCTGCACAGTGAAGCTTTGAAATTCTTAGAGGAAGCTATCATTTGGGAAAAACAAAACCCAGACTGGATCTTTGAATTGGGTCTTGAGTATGCTGAAAATCGTAATCTGAATCTGGCTCTTTGCTATGTAAAAGAATATCTGGACTTAACTGCTGGCTCACTATTGAAAGGATGGAGGCTTTTGGCACTAATTTTATCAGCTCAGAAACGTTATTCTGAAGCAGAAACTGTCCTTGATGCTGCTTTAGATGAAACAGGAAAATGGGAACAAGGAGTGTTGTTGAGAACAAAAGCAAAACTACAGATTGCACAGTCATCGCCAATGAATGCCATTGAAACATACAGGCTTCTTCTTGCTTTGGTTCAAGCACAAAGAAAGAGCTTTGGAGCTGGAAAATGCACTCCAAAGGTTGAAGGTGAAAGGGTTCTTGAAGTTGGAGTTTGGCAAGATTTGGCTCGTCTATATTCTGGTCTCTCTCGTTGGCGAGATGCTGAAATATGTTTGGAGAAGGCTAAAGCTTTAAAAATTTATTCTGCAGAGACATCACATGCAAAAGGAGTTCTATGTGAAGCGCGTAGTCAAACGCAGGAAGCACTAGCTGCTTATACTAATGCACTTTCTGTTGATCCAGACCATGTGCCTTCTAAAGTGTCTCTTGGGGCATTGTTGTGGCGAACTGGTGGCAAGTCCTTGCCAGTTGCTAGAGGTTTGTTGTCAGACGCATTACGGCTGGATCCTACAAACTATGTTGCCTGGTACTATTTAGCCATGGTTCATAAAGATGAGGGGAGAGCTTCAGACGCTGTTGATTGTTTCCAGGCAGCATGTATGCTTGAGGAGTCTGCTCCAATTGAGAAGTTTTCATCAGCTTGTTAAGCTCTGTATTGTGAAATAAACTACATTATTTAAATTTGTAAAATGTGATTCATTCAGAACAGTTCTATTTGGAGCTGTATCATGCAGCCCAAAGTTTTGAGGTAACCCACTTCACATTGATGTGATCTTGGAGCCTGATTGGTTGTCAGAGCTTCCATTGGTCGACTGGTGTAAGATTATGTAGAATATTTGTTAATGATAGATTTTGAATTCAAGCCAACTATCTCCCAATGATTTGATTGGCTGGTTGTGCAATAGATT

Ace file of the UniGene sp_v1.1_unigene25859

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	O-linked n-acetylglucosamine transferase, ogt, putative n=1 Tax=Ricinus communis RepID=B9RLG2_RICCO	-	-	61%
FL-Next	tr=O-linked n-acetylglucosamine transferase, ogt, putative; Ricinus communis (Castor bean).	-	-	67%
Blast2go	o-linked n-acetylglucosamine	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	calmodulin binding	GO:0005516	Molecular Function	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9RLG2

Fln msg: Overlapping hits, possible frame ERROR between 603 and 578,

Fln protein: MPWLKSVLCKMLCTCSREQVGVEEGGLSKDVMAFKEVSANGLSAKTTEVETKLDEGNIEEAESSLREALSLNYEEARALLGRLEYQRGNIxxxxxxxxxxIELHAVKQRLRSSISEKAHSKRGRSRQELSQSVSLHAASLLLEAIYLKALSLQKLGRLTEAAQECKSVLDTIENAFPQGMPELLGDNKLQETVGKAVELLPELWKQAGLQHEAMAAYRRALLSQWHLDADCCARIQKEFAILLLYGGVEAGAPSLAAQIDGSFVPKNNTEEAILLLMILLRKCCLRKIAWDPAVMDHLTFALSLSGQSLVIAKQVEEVLPGIYARSDRWNDLALCYSGARQNLVALNLLRKSLSKSEKPNDLSALLLAAKICTEDFHLAAEGVEYARRAVENAKGEFEHLKGIAYRLLGLALERKLKLRLQTQKEPVCTVKL*NS*RKLSFGKNKTQTGSLNWVLSMLKIVI*IWLFAM*KNIWT*LLAHY*KDGGFWH*FYQLRNVILKQKLSLMLL*MKQENGNKECC*EQKQNYRLHSHRQ*MPLKHTGFFLLWFKHKERALELENALQRLKVKGFLKLEFGKIWLVYILVSLVGEMLKYVWRRLKL*KFILQRHHMQKEFYVKRVVKRRKH*LLILMHFLLIQTMCLLKCLLGHCCGELVASPCQLLEVCCQTHYGWILQTMLPGTI*PWFIKMRGELQTLLIVSRQHVCLRSLLQLRSFHQLVKLCIVK*

Protein Length: 726

Fln nts: ATGGGGGCGTGTCTGGCATTTGTACACTGAGCTTCGCTTCTCTCCTCTGCTCTGCCCGTGCGTATGTTTTTAGTGTTTTTAGTGCAGAGGAAGGACTGAAGCCGAAGGTGCCTTTCAATTCACAGGTCTTTGTTATTCTTTTGAGATCTCGAGTGCATGGAGGGACAAATACGATCAGAAGCTCCGCGCGACGCCATTGTCGTCAGGTCCAGGGATCGATTCTTGCTGATCAAGTCATGAGAAACCAGGCATGGATTGTCATTGCACAGGTGGTTGGGTAAATGCTACACCAATTTGACCTGGTGG_-_ATGCCTTGGCTCAAAAGTGTGCTGTGCAAAATGTTGTGTACCTGTTCAAGGGAACAAGTTGGGGTAGAGGAAGGTGGTCTCTCCAAAGATGTGATGGCTTTCAAAGAGGTCTCTGCCAATGGACTCTCTGCTAAAACAACTGAGGTTGAAACGAAACTTGATGAAGGAAACATTGAAGAAGCCGAGTCTTCACTCCGTGAAGCATTATCTCTAAATTATGAGGAGGCTAGAGCTCTATTAGGAAGATTAGAGTATCAAAGAGGAAACATTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATTGAATTACATGCTGTAAAACAGCGCTTACGGTCGTCTATTTCAGAAAAAGCTCACTCTAAACGAGGTCGATCACGGCAAGAACTATCACAATCAGTTTCACTACATGCAGCCAGCCTATTGCTTGAGGCGATATACTTGAAGGCATTGTCACTGCAAAAGCTTGGTCGTCTAACAGAAGCTGCTCAAGAATGCAAAAGTGTTCTAGACACAATTGAAAACGCTTTTCCTCAGGGCATGCCTGAGTTGTTGGGAGACAACAAACTGCAAGAGACAGTTGGCAAGGCTGTTGAACTTCTACCAGAACTGTGGAAGCAAGCAGGTCTCCAGCATGAAGCAATGGCTGCATATAGACGGGCTCTCCTTAGTCAATGGCACCTTGATGCAGATTGTTGCGCAAGAATACAAAAGGAATTTGCTATATTGTTACTTTATGGGGGGGTTGAGGCAGGTGCACCTAGTTTAGCTGCTCAGATTGATGGTTCATTTGTCCCAAAGAATAATACAGAGGAGGCTATTCTATTGCTTATGATTCTCCTAAGAAAATGTTGTCTACGCAAAATTGCGTGGGATCCTGCAGTCATGGATCACCTTACTTTTGCACTTTCTCTTTCTGGACAATCCCTTGTAATAGCAAAGCAAGTTGAAGAGGTCTTACCTGGAATTTATGCAAGGTCTGATCGATGGAATGATCTGGCTCTTTGTTATAGTGGTGCGAGGCAAAATCTGGTTGCGTTAAATCTTCTAAGAAAGTCATTGAGCAAATCAGAAAAACCAAATGATTTGTCAGCATTGTTATTAGCAGCAAAGATTTGTACTGAAGATTTCCATCTTGCTGCTGAAGGAGTGGAATATGCAAGAAGAGCTGTGGAGAATGCCAAAGGGGAGTTTGAACACTTAAAGGGCATTGCATATCGTTTATTAGGTCTTGCATTGGAAAGGAAACTAAAGCTTCGTCTTCAGACTCAGAAAGAACCCGTCTGCACAGTGAAGCTTTGAAATTCTTAGAGGAAGCTATCATTTGGGAAAAACAAAACCCAGACTGGATCTTTGAATTGGGTCTTGAGTATGCTGAAAATCGTAATCTGAATCTGGCTCTTTGCTATGTAAAAGAATATCTGGACTTAACTGCTGGCTCACTATTGAAAGGATGGAGGCTTTTGGCACTAATTTTATCAGCTCAGAAACGTTATTCTGAAGCAGAAACTGTCCTTGATGCTGCTTTAGATGAAACAGGAAAATGGGAACAAGGAGTGTTGTTGAGAACAAAAGCAAAACTACAGATTGCACAGTCATCGCCAATGAATGCCATTGAAACATACAGGCTTCTTCTTGCTTTGGTTCAAGCACAAAGAAAGAGCTTTGGAGCTGGAAAATGCACTCCAAAGGTTGAAGGTGAAAGGGTTCTTGAAGTTGGAGTTTGGCAAGATTTGGCTCGTCTATATTCTGGTCTCTCTCGTTGGCGAGATGCTGAAATATGTTTGGAGAAGGCTAAAGCTTTAAAAATTTATTCTGCAGAGACATCACATGCAAAAGGAGTTCTATGTGAAGCGCGTAGTCAAACGCAGGAAGCACTAGCTGCTTATACTAATGCACTTTCTGTTGATCCAGACCATGTGCCTTCTAAAGTGTCTCTTGGGGCATTGTTGTGGCGAACTGGTGGCAAGTCCTTGCCAGTTGCTAGAGGTTTGTTGTCAGACGCATTACGGCTGGATCCTACAAACTATGTTGCCTGGTACTATTTAGCCATGGTTCATAAAGATGAGGGGAGAGCTTCAGACGCTGTTGATTGTTTCCAGGCAGCATGTATGCTTGAGGAGTCTGCTCCAATTGAGAAGTTTTCATCAGCTTGTTAAGCTCTGTATTGTGAAATAA___ACTACATTATTTAAATTTGTAAAATGTGATTCATTCAGAACAGTTCTATTTGGAGCTGTATCATGCAGCCCAAAGTTTTGAGGTAACCCACTTCACATTGATGTGATCTTGGAGCCTGATTGGTTGTCAGAGCTTCCATTGGTCGACTGGTGTAAGATTATGTAGAATATTTGTTAATGATAGATTTTGAATTCAAGCCAACTATCTCCCAATGATTTGATTGGCTGGTTGTGCAATAGATT

Fln Alignment:

sp_v1.1_unigene25859___EEGGLSKDVMAFKEVSANGLSAKTTEVETKLDEGNIXXXXXXXXXXXXXNYEEARALLGRLEYQRGNIxxxxxxxxxIELHAVKQRLRSSISEKAHSKRGRSRQELSQSVSLHAASLLLEAIYLKALSLQKLGRLTEAAQECKSVLDTIENAFPQGMPELLGDNKLQETVGKAVELLPELWKQAGLQHEAMAAYRRALLSQWHLDADCCARIQKEFAILLLYGGVEAGAPSLAAQIDGSFVPKNNTEEAXXXXXXXXXXXXXXXIAWDPAVMDHLTFALSLSGQSLVIAKQVEEVLPGIYARSDRWNDLALCYSGARQNLVALNLLRKSLSKSEKPNDLSALLLAAKICTEDFHLAAEGVEYARRAVENAKGEFEHLKGIA
B9RLG2_______________EEFGEYEEQTLVREVCANGICMKTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGRLEYQRGNVxxxxxxxxxIDLQAAIERLQPAFSDKQSSKKGRPRSDSQHAVSQHAASLVLEAIYLKAKSLQKLGRINDAAKECKSVLDAVEKIFHQGIPDAQVDNRLQDTVSQAVELLPELWKQVGCYDEAMSAYRRALLSQWNLDDECCARIQKGFAVFLLHSGVEAGPLSLAAHIDGSYVPKHNLEEAVLLLMILIRKSYLGKTKWDSSVVEHLTFALSLCSQTSILAKQLEEIMPGLFHRVDRWNTLALCYCGAGKHDVAINLLRKSLHKHERPDDLMALLLAAKICSEDSHLAAEGVGYAQRAISNSQGIDEHLKGVA

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
796	87		12		0.992554
798	87		12		0.992554
887	10		90		0.90298
930	11		88		0.923564
1094	80		20		0.995493
1268		30		69	1.0
1519		90		10	0.90298
2186			90	10	0.90298
2187		90	10		0.90298
2188			10	90	0.90298
2279			8	92	0.999718

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain