SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25857

Length: 449 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene25857
CGGCAAAAGAATAAAGCCCTCAGGGACTGAAGGTTCCCTAGGGTTATAAGGATCTCTATCATATCTTAATGACAAATGCACAGAGCGCGTGATCGCGTTCCGTCGTGATTTATTACATTAAATGGGATCATGGATATACTTGGCACGGAATGATGATTGGTTGAAGTGGGCTGTATAAATTTCCAATCTCGTTAATTTAATTTCAGCAGAAAAAAAATGAATTCTGGGACATTAGAAGGAAGCATTCCTCCTGCTTCGAGGAGGGATCCGTACGAAGTACTTGGAGTTTCAAGGGATGCATCTGATCAAGAGATAAAGACTGCTTACAGGAAGCTTGCTCTCAAATATCATCCTGACAAAAATGCAAGTAATCCTGAAGCTTCAGAATTGTTTAAAGAGGTTGCATACTCTTACAGCATTCTTTCGGATCCAGAGAAAAGAAGGCAGTA

Ace file of the UniGene sp_v1.1_unigene25857

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ARG1; ARG1 (ALTERED RESPONSE TO GRAVITY 1); cytoskeletal protein binding	-	-	2.0e-28	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	protein	-	-	1.3225e-29	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	phototropism	GO:0009638	Biological Process	1.3225e-29	91%
Blast2go	positive gravitropism	GO:0009958	Biological Process	1.3225e-29	91%
Blast2go	protein binding	GO:0005515	Molecular Function	1.3225e-29	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	1.3225e-29	91%
Blast2go	Heat shock protein DnaJ	IPR003095	-	1.3225e-29	91%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN93

Fln msg: Distance to subject end: 116 aas, your sequence is shorter than subject: 77 - 182

Fln protein: MNSGTLEGSIPPASRRDPYEVLGVSRDASDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQ

Protein Length: 78

Fln nts: CGGCAAAAGAATAAAGCCCTCAGGGACTGAAGGTTCCCTAGGGTTATAAGGATCTCTATCATATCTTAATGACAAATGCACAGAGCGCGTGATCGCGTTCCGTCGTGATTTATTACATTAAATGGGATCATGGATATACTTGGCACGGAATGATGATTGGTTGAAGTGGGCTGTATAAATTTCCAATCTCGTTAATTTAATTTCAGCAGAAAAAAA_-_ATGAATTCTGGGACATTAGAAGGAAGCATTCCTCCTGCTTCGAGGAGGGATCCGTACGAAGTACTTGGAGTTTCAAGGGATGCATCTGATCAAGAGATAAAGACTGCTTACAGGAAGCTTGCTCTCAAATATCATCCTGACAAAAATGCAAGTAATCCTGAAGCTTCAGAATTGTTTAAAGAGGTTGCATACTCTTACAGCATTCTTTCGGATCCAGAGAAAAGAAGGCAGTA

Fln Alignment:

sp_v1.1_unigene25857___DPYEVLGVSRDASDQEIKTAYRKLALKYHPDKNASN-PEASELFKEVAYSYSILSDPEKR
B8LN93_______________DYYIILNVGRRASEDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDPQKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain