SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25835

Length: 1269 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25835

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S11-1 n=12 Tax=core eudicotyledons RepID=RS111_ARATH	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	40s ribosomal protein s11	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	cell wall	GO:0005618	Cellular Component	96%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	96%
Blast2go	membrane	GO:0016020	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein S17	IPR000266	-	96%
Blast2go	Nucleic acid-binding, OB-fold	IPR012340	-	96%
Blast2go	Nucleic acid-binding, OB-fold-like	IPR016027	-	96%
Blast2go	Ribosomal protein S17, archaeal	IPR019978	-	96%
Blast2go	Ribosomal protein S17, conserved site	IPR019979	-	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN19

Fln msg:

Fln protein: MAEQTERAFLKQPKVFLSSKTSGKGKRPGKGGNRFWKNVGLGFKTPKEAIQGTYIDKKCPFTGTVSIRGRILAGTCYSAKMTRTIIVRRDYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGSAKKAFTAI*

Protein Length: 162

Fln nts: ATAAACACATGTACAAACTGGGGAAAATGCAAGTCAAACTTTTATGATTAAAGAGTGCAAACCCATTCAAACAATTCCCACCAAAAACCCTAGAGATATGAAATAGATTTATTTTAATTGACAATGAGGGTTTCGACTAAAAAGAGGATCGAAGGAGGGTACTAGGGTTATTGGGATTAAATAAGGAAGGCTTCTATTTACTGACCTTGTTTCACAAGCAGGGGAGGGAGCGGCGGCGGCGGCGGGAGTCTCGATTTTCAGCAGCC_-_ATGGCAGAACAGACTGAGAGAGCTTTTCTAAAGCAACCAAAAGTCTTTCTCAGTTCCAAGACGTCTGGGAAGGGGAAACGACCTGGAAAAGGTGGCAACAGGTTTTGGAAGAATGTTGGTCTTGGCTTCAAGACCCCCAAAGAAGCTATTCAAGGGACCTACATCGACAAGAAGTGCCCATTCACTGGTACTGTTTCAATAAGAGGTCGTATATTAGCCGGAACATGTTACAGTGCTAAAATGACACGGACAATTATTGTCCGTAGGGACTATCTCCATTTTGTCAAGAAATATCAGAGGTATGAGAAGAGACATTCGAACATACCAGCCCATATTTCACCCTGTTTCCGTGTCAAGGAAGGGGATCATGTTATCATTGGGCAATGCAGGCCCTTGTCCAAGACTGTAAGGTTTAATGTTCTGAAGGTGATTCCTGCGGGTTCTAGCAGTGGTTCTGCAAAGAAAGCCTTCACTGCAATATGA___ATCCGTTTTTTTTCTTTGTACAAGCAAACCATATAATCCGTCAAATGCAATAGCGTAGGCGTTGACAGAGTTGAGGGTTACTATTTTATCATTTGCTCAAATTAATTTTGTTAGTTTAATCCTTCTTTTGGTTACTGTATTGAATTTTGAAAAATATGTACGGATAACGTTTACTCCTTGGTGGTTGAAAGTCCACCTTTCTTGGATACTTTTGTTTTGGTTTTAGCATCCAGTAAACCTTTGAAAGCATATTCTTGGAATATTTTTTTATTTCAATAGCCACGATGTCATATTTAGTTTGGCTTTTAATTATTTCTTTAGGAGGTGGCATTCGTGTGCGTTAAGCTGTTGTCTTGGCAATAATAAATATTGCTATGAAATGATCACCTAACTTTCCCAACATAACTTTGAATTTATAAAGGTGCAATCTAGTAATATGTGATGGTTGCCAATGGTATTTCATGTGAAGATGTTGAAATTTAATTCACACGAGGTTTGTAATGTAATGTGTGTGGATTTT

Fln Alignment:

sp_v1.1_unigene25835___MAEQTERAFLKQPKVFLXXXXXXXXXXXXXXXNRFWKNVGLGFKTPKEAIQGTYIDKKCPFTGTVSIRGRILAGTCYSAKMTRTIIVRRDYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPXXXXXXXXXXXFTAI
A9NN19_______________MAEQTERAFLKQPKVFLSSKKSGKGKRPGKGGNRFFKNVGLGFKTPKEAVQGTYIDKKCPFTGNVSIRGRILAGTCYSAKMTRTIIVRRDYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGSAKKAFTAI

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
706			87	12	0.992554
1087	16		83		0.999991
1090		83	16		0.999991

SSRs (tot: 1)

Start position	End position	Sequence	Length
230	245	GCG GCG GCG GCG GCG G	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain