SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25831

Length: 1407 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25831

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Adenylyl cyclase-associated protein n=1 Tax=Populus trichocarpa RepID=B9H0Q2_POPTR	-	-	61%
FL-Next	sp=Adenylyl cyclase-associated protein; subsp. trichocarpa).	-	-	62%
Blast2go	adenylyl cyclase associated protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	0.0	71%
Blast2go	actin binding	GO:0003779	Molecular Function	0.0	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9H0Q2

Fln msg: your sequence is shorter than subject: 312 - 466

Fln protein: WSTRARIAIHVEWAKALKEFFVPGLRDYVRKNYPVGPTWNPTGVDVKEFKANNSSLVPASPNALPQYTSLPPPPLPSRSLPVSADGTGGLKASASAVFQEINKGETVTAGLRKVTADMKTKNRLDGQGVATVGSGSIKPRSRGSAFSKEGPPKLELQMGRRWAVENQIGKKNLTIDECNSKQSVYIFGCKDSVVQVQGKVNNISIDKCTKTGVVFMDVVAACEIVNCNGVEVQCQGTVPTVSVDNTAGCHLYLSRSSIGASITTAKSSEVNVLVPDATDNSDMLEHALPEQFIHTYKDGQFITCPVLHSVG*

Protein Length: 313

Fln nts: TGGAGTACAAGAGCAAGGATAGCAATTCATGTTGAGTGGGCAAAGGCTTTAAAGGAGTTTTTTGTGCCAGGCCTGAGGGATTATGTTAGAAAAAATTATCCTGTAGGACCAACTTGGAATCCAACTGGAGTGGATGTTAAGGAATTTAAGGCAAACAATTCCTCATTGGTTCCGGCTTCACCAAATGCTTTGCCTCAATATACCTCTTTGCCACCACCACCACTGCCATCCAGATCACTTCCTGTTTCTGCAGATGGTACAGGTGGTCTTAAAGCAAGCGCAAGTGCAGTATTTCAAGAAATCAACAAGGGAGAAACTGTAACTGCAGGTCTTAGAAAGGTAACAGCTGACATGAAGACAAAGAATCGCCTAGATGGACAAGGAGTTGCTACTGTTGGAAGCGGAAGCATTAAACCCAGATCTCGTGGGTCTGCCTTCTCTAAAGAAGGGCCTCCAAAGCTGGAGCTCCAAATGGGTCGCAGATGGGCAGTGGAAAATCAAATTGGTAAGAAGAATCTTACCATAGATGAGTGCAATTCCAAACAATCGGTCTACATTTTTGGTTGCAAAGATTCTGTTGTGCAAGTTCAAGGTAAAGTTAACAATATTTCCATTGACAAATGCACAAAAACAGGAGTTGTCTTTATGGATGTTGTGGCAGCTTGTGAGATAGTTAACTGTAATGGAGTTGAAGTGCAGTGTCAGGGTACAGTTCCAACTGTTTCTGTTGATAATACAGCCGGTTGTCATCTATACTTAAGCAGGAGTTCAATAGGAGCATCTATAACAACAGCTAAGTCAAGTGAAGTTAATGTACTAGTCCCGGATGCAACAGATAATTCTGACATGTTGGAGCACGCATTACCTGAACAGTTCATACATACCTACAAGGATGGGCAGTTTATAACCTGCCCCGTCCTGCACTCAGTTGGCTGA___ATGACTTAAGCACCTTCACTCATTCACCCATTTAAAGAATATGTGACGTTTAGATGTACAATTATGTTGAGCATTTTGAGCCTTGTATTATGTTTGTTTCTGACCTTGTCTCTAGTATCATTAGATTTTTGGGCTCTTATTCTTATTGCGGCAGATAGACATTGAAGCTTCAATGTTTCCTTCTGTAATTTTTGGGCATTCGAAATTGTATCATAAAGGTGTCCCTGCAAACCTATATAATATTTTCATCCTTATTGTCGACACAGTCGAGTTTCTGTTATTATGGAGATGCTGTGCGAGTGCAATTGTATTTTGCACGGGAAATTATGTGGAGTGATGATCTTTTATTTGTATGTGACAAGGCATAAAGCACATTTTCGAGTTTTCGTGGTAAGTTTGCTCTAATGTAACTCTCTGGATAACGTTGCAAAGTTTAAAGAATGTAAGAGATCAGCTATATGTTTAACAATG

Fln Alignment:

sp_v1.1_unigene25831___HVEWAKALKEFFVPGLRDYVRKNYPVGPTWNPTGVDVKEFKANNSSLVPASPNAXXXXXXXXXXXXXXXXXXXXADGTGGLKASASAVFQEINKGETVTAGLRKVTADMKTKNRLDGQGVATVGSGSIKPRSRGSAFSKEGPPKLELQMGRRWAVENQIGKKNLTIDECNSKQSVYIFGCKDSVVQVQGKVNNISIDKCTKTGVVFMDVVAACEIVNCNGVEVQCQGTVPTVSVDNTAGCHLYLSRSSIGASITTAKSSEVNVLVPDATDNSDMLEHALPEQFIHTYKDGQFITCPVLHSVG
B9H0Q2_______________HVEWAKALKELYLPGLRDYVKSHYPLGPVWSATA---KAKAAAPSAPAPPPP-----------PPASLFTSESSSPSSSKPKVGMAAVFQEISSGKPVTSGLRKVTDNMKTKNRADRTGV--VGASEKESRTSSPSFSKAGPPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYIFGCKDSVLQVQGKVNNITIDKCTKMGVVFTDVVAACEIVNCSGVEVQCQGSAPTISVDNTGGCQLYLSKGSLGASITTAKSSEINILVPGAEPDGDLVEHALPQQFIHTFKDGQFETTPVSHSGG

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
660	85		14		0.993533
680	12		87		0.992554
682	87		12		0.992554
683	90		10		0.90298
684			10	90	0.90298
777	81		18		0.999994
825	50		50		1.0
844		11	88		0.999952
856		88		11	0.999952
912		46		53	1.0
1002			62	25	1.0
1172	25			75	1.0
1176	66			33	1.0
1196	25		75		1.0
1257	30		70		1.0
1378		50		50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
211	223	CCA CCA CCA CCA C	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain