SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25817

Length: 1660 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25817

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ACT1, act2; actin 1	-	-	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	actin	-	-	98%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYV3

Fln msg:

Fln protein: MADTEDIQPLVCDNGSGMVKAGFAGDDAPRAVYPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETSKSSSSQEKNYELPDGQVITVGAERFRCAEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKTEYEESGPSIVHRKCF*

Protein Length: 379

Fln nts: GTATCAACGCAGAGTACATGGGGATCTCGCGAGCCAGCCAAAGAAGGAGAAGGTTATAGGCATAGCAGGCGAACCAGAACCAGATCTTCAATTTAAGTGAACAAAATA_-_ATGGCCGATACAGAGGATATTCAACCGCTTGTCTGTGACAATGGGTCCGGAATGGTTAAGGCTGGATTTGCGGGAGATGATGCTCCTAGGGCAGTGTATCCCAGTATTGTGGGTCGACCACGCCATACTGGAGTCATGGTTGGAATGGGACAGAAAGATGCTTATGTAGGGGATGAAGCTCAATCAAAGAGAGGTATCCTTACTTTAAAGTACCCAATCGAGCATGGGATTGTGACCAACTGGGATGACATGGAGAAGATTTGGCATCACACATTCTATAATGAACTTCGAGTTGCCCCGGAGGAACACCCTGTACTACTTACAGAAGCACCTTTGAATCCCAAGGCCAACAGGGAGAAGATGACTCAGATTATGTTTGAAACCTTCAATGTACCGGCCATGTATGTTGCCATTCAGGCTGTGCTGTCCCTATATGCAAGCGGGCGTACAACTGGTATTGTTCTCGACTCTGGAGATGGTGTTACACACACTGTGCCAATTTACGAAGGGTACGCCCTTCCACATGCTATTCTTAGGTTAGATCTTGCTGGGAGAGATTTGACAGATGCTCTGATGAAGATACTGACTGAAAGGGGCTACTCATTCACCACTACAGCAGAGCGTGAAATTGTACGTGACATGAAAGAGAAGCTTGCTTATGTAGCCCTTGACTATGAGCAAGAACTTGAAACATCGAAGAGTAGTTCTTCACAAGAAAAGAATTATGAGCTTCCTGATGGACAGGTCATTACCGTTGGTGCTGAGCGTTTCAGATGTGCTGAGGTTTTGTTCCAGCCATCTCTCATTGGAATGGAAGCAGCGGGTATCCATGAGACTACATACAATTCCATTATGAAATGTGATGTGGATATCAGAAAAGATCTCTATGGAAACATTGTTCTTAGTGGTGGTTCTACCATGTTTCCTGGTATAGCTGATCGTATGAGCAAAGAGATCACTGCACTTGCTCCCAGTAGCATGAAAATCAAAGTTGTAGCACCCCCTGAGAGGAAGTACAGTGTTTGGATCGGAGGTTCTATCTTGGCATCTCTTAGCACATTTCAGCAGATGTGGATTGCCAAGACCGAGTATGAGGAATCAGGTCCCTCAATTGTTCACAGAAAGTGTTTTTAA___ACAGAGTGCTCTATTGCTTATGCTTTATGATTGGTCTTTAGATATTATGAGGGTGGAAGACAAGATTACCGATATTTTGATTTAGTATCATGCTTTAGGATTTGCATCTGTATAGTTGAATTCTAGGAATTCTTAAGGACCGTCTTCTCATATCTGTTTTCATGCCATTGTCATGGGGAGACAACTTTGTTCTAATGCCGACGTTTCGACATCGAAACTTCTCGCCATTATTCTTTATAAATTTTGCAATGGTAATTGAGATAAAGTAGTTTTTTTTAGATATGACGGTCAATTATTTGTTTGAGATATTTAAATTTGGCCATGGTTAAATCGTCAATCTAAATGGTACATTATTAAAAAAATATTGTACTTTTATTTTAAGGTCAGCTCTGCTGTGGATTGCAATTTATGTGGTCAC

Fln Alignment:

sp_v1.1_unigene25817___MADTEDIQPLVCDNGSGMVKAGFAGDDAPRAVYPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETSKSSSSQEKNYELPDGQVITVGAERFRCAEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKTEYEESGPSIVHRKCF
A9NYV3_______________MADTEDIQPLVCDNGSGMVKAGFAGDDAPRAVYPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSQEKSYELPDGQVITVGAERFRCAEVLFQPSLIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQKWIAKTEYEESGPSIVHRKCF

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
405		66		33	0.997452
406		66	33		0.997452
407	33	66			0.997452
408		66	33		0.997452
409			66	33	0.997452
410		33	66		0.997452
412			66	33	0.997452
413		33	66		0.997452
414	66			33	0.997452
415	66			33	0.997452
417	66			33	0.997452
424	66			33	0.997452
425		66	33		0.997452
426			33	66	0.997452
427	66	33			0.997452
431	66		33		0.997452
432		66	33		0.997452
433	66		33		0.997452
434	33		66		0.997452
435	66			33	0.997452
436	66			33	0.997452
437		33	66		0.997452
438	33	66			0.997452
440	33	66			0.997452
441		66	33		0.997452
442			33	66	0.997452
444			33	66	0.997452
445		33	66		0.997452
446	66			33	0.997452
985	84	3			1.0
987	84			16	1.0
988	84	4	12		1.0
990	84	12		4	1.0
991		12	88		1.0
992	87			12	1.0
994		88	12		1.0
995			12	88	1.0
997		13	3	82	1.0
998	72	3	24		1.0
1000	3		86		1.0
1001		10	75	13	1.0
1002	82		13	3	1.0
1003	86	13			1.0
1004	75	13		10	1.0
1006	86			13	1.0
1008			13	86	1.0
1010		13		86	1.0
1012		85	14		1.0
1014		14		85	1.0
1016		14	85		1.0
1019		14	85		1.0
1020	14			85	1.0
1124	86	9		4	0.999642
1125	86	4		9	0.999642
1266		4	3	92	0.999691
1267	90	1	4	1	0.99885
1272			3	96	0.982166
1273		6	1	92	1.0
1294	96		3		0.984346

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain