SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25813

Length: 1678 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene25813 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tyrosine-protein phosphatase SIW14, putative n=1 Tax=Ricinus communis RepID=B9T828_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	tyrosine specific protein phosphatase family protein	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein-tyrosine phosphatase, SIW14-like	IPR004861	-	0.0	78%
Blast2go	Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic	IPR020428	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNY6

Fln msg:

Fln protein: MASPSIQFQNPNENRPPMALKRLETPKSSRAHKEALWPNTSIDVLLLKFEDTCFSVSRGRLGKTHWGRIADAVNAVCSANYSGVQCKYKWNRLKKSYNKAKLHGETSRFVHYKRVERIVQKASGEKLHEDDEEEEEEEEEMASEDDGVDSICEAASIESKPSSVSMSATEDDDVPRRPQKRGVTLKSFGNKMEQSMNNLAQSMKNIEKTRTDKMMKLLDAQMEITSILVQNNKRLKPSDGVAAGRAWSMNEAALMCQQQGLVSSFVPPLNFAMVDKGVYRSGFPNHANFPFLKTLKLRSIIYLCPEPCPEVNMKFLRAEEIQIFQFGIICYKEPKLDISEDDISDALKILLDIRNHPLLIHCKTGKRPTSCLVGCLRKMQNWCLASVFDEYERFAGTKTRVSDLQFIEQFKVANK*

Protein Length: 417

Fln nts: ATCAAGGGAGGACAGGAAATCATTACCGGCAACCATTACAATCTCAATTCAAACCCAGTGCAGAAAACGGTGAGGCTATCCTCTTCCCTGAATTGGATTGTGATAACCTT_-_ATGGCATCGCCCTCAATTCAATTCCAGAACCCCAATGAGAACCGCCCGCCCATGGCCCTCAAGAGATTAGAGACGCCTAAGTCCTCAAGAGCTCACAAGGAAGCTCTCTGGCCCAACACCTCCATCGATGTCTTGCTCCTAAAGTTCGAAGACACGTGCTTCAGTGTCAGCCGGGGCCGATTGGGGAAAACCCACTGGGGCCGAATCGCCGATGCTGTCAACGCTGTCTGCAGCGCTAATTACAGTGGTGTCCAGTGCAAATACAAGTGGAATCGCCTGAAGAAATCCTATAACAAGGCTAAATTGCATGGGGAGACCTCCAGGTTTGTGCACTATAAGCGTGTTGAGCGAATTGTGCAGAAGGCTTCGGGGGAGAAGCTCCATGAAGATGACGAAGAGGAGGAGGAGGAGGAGGAAGAAATGGCTTCTGAGGATGATGGTGTGGATAGCATCTGTGAAGCAGCCTCCATTGAATCCAAGCCCAGTTCGGTTTCTATGAGTGCCACCGAGGATGATGATGTGCCCAGACGACCTCAGAAGAGAGGGGTGACCCTCAAGTCATTTGGGAATAAGATGGAACAGAGCATGAACAACCTTGCACAGTCCATGAAAAACATAGAGAAGACCAGGACGGATAAAATGATGAAGCTTCTTGATGCCCAGATGGAGATTACCTCAATTCTAGTCCAAAACAACAAAAGGTTAAAACCAAGTGACGGAGTAGCTGCAGGCAGAGCTTGGTCAATGAATGAGGCGGCTTTGATGTGCCAACAACAAGGACTGGTTTCTAGTTTTGTCCCTCCGTTGAATTTTGCAATGGTAGATAAGGGGGTTTATAGATCAGGATTCCCCAACCATGCAAACTTTCCGTTTCTGAAGACCTTGAAGCTTCGCTCTATAATTTATCTCTGTCCCGAGCCTTGTCCTGAAGTCAATATGAAGTTTCTACGAGCTGAAGAAATTCAAATCTTCCAGTTTGGAATAATATGCTATAAGGAGCCTAAATTGGATATATCTGAGGATGACATAAGCGATGCATTGAAGATTTTACTTGATATAAGAAACCATCCTCTATTAATTCATTGCAAAACAGGGAAGCGCCCTACAAGTTGTTTGGTAGGATGTTTACGTAAAATGCAGAATTGGTGCCTTGCATCAGTGTTTGATGAATATGAGCGATTTGCTGGAACAAAAACCCGAGTATCAGATTTGCAATTCATAGAACAGTTCAAGGTAGCAAATAAATAG___AATCACAGTGATTCCTCGACAATTTTCTCAATTATCAGGGGTTAAAATCTGGGGGCCTGTGGCAACTTCATAACAAATATGATTTGCATTTCACTAAGTGCTGTGAAATGAATGCAAAGGGCAAGTAATTTCCTTTCAACATTGCTCAGGTTACAATATTATTCATTGAGTTCAGCTTGGAAATAGTTTCTTCGGCTGTGCTATATGGTTCATTTACCACATGTGAACGTTGATCCTTGGTCATGGAATTTAATTATTTATTTAGTGGCTAATAATTGACTGTTGAGTTTCCGATTTGATGTCAACGGCATTGAAGTCAA

Fln Alignment:

sp_v1.1_unigene25813___MASPSIQFQNPNENRPPMALKRLETPKSSRAHKEALWPNTSIDVLLLKFEDTCFSVSRGRLGKTHWGRIADAVNAVCSANYSGVQCKYKWNRLKKSYNKAKLHGETSRFVHYKRVERIVQKASGEKLHXXXXXXXXXXXE-MASEDDGVDSICEAASIESKPSSVSMSATEDDDVPRRPQKRGVTLKSFGNKMEQSMNNLAQSMKNIEKTRTDKMMKLLDAQMEITSILVQNNKRLKPSDGVAAGRAWSMNEAALMCQQQGLVSSFVPPLNFAMVDKGVYRSGFPNHANFPFLKTLKLRSIIYLCPEPCPEVNMKFLRAEEIQIFQFGIICYKEPKLDISEDDISDALKILLDIRNHPLLIHCKTGKRPTSCLVGCLRKMQNWCLASVFDEYERFAGTKTRVSDLQFIEQFKVAN
B8LNY6_______________MASPSIQFQNPNENRPALALKRIETTKSSRAQKEALWPNTSIDVLLLKFEDTCFSVSRGRLGKTHWGRIADAVNAVCSANYSGVQCKYKWNRLKKSYNKAKLHGETSRFVYYKRVERIVQKASGEKLHEDEEEEEEEEEEEMASEDDGVDSICEAASIESKPSSASMSATEDDDVHRRPQKRGVTLKSFGDKMEQSMNNLAQSMKNIEKTRTDKMMKLLDAQLEITSMLVQNNKRLKPSDGVAAGRAWAMNEAGLMCQQQGRVSSFVPPLNFAMVDKGVYRSGFPNHANFPFLKTLKLRSIIYLCPEPYSEVNMKFLRAEEIQIFQFGIIGYKEPIIGISEDDIRDALKILLDIRNHPVLIHCKTGKHPTSCLVGCLRKIQNWCLATVFDEYQRFVGIKARVSDLQFIERFNVPN

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
159	66	33			0.997452
497	83		16		0.994512
557			16	83	0.994512
573	14		85		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
1153	1172	TCC TCC TCC TCC TCC TCC TC	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain