SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25808

Length: 1741 nt

Origin of reads: Biogeco_1 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene25808 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ADP,ATP carrier protein, putative n=1 Tax=Ricinus communis RepID=B9RVW7_RICCO	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protein	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	purine nucleotide transport	GO:0015865	Biological Process	94%
Blast2go	copper ion binding	GO:0005507	Molecular Function	94%
Blast2go	ATP:ADP antiporter activity	GO:0005471	Molecular Function	94%
Blast2go	protein binding	GO:0005515	Molecular Function	94%
Blast2go	mitochondrion	GO:0005739	Cellular Component	94%
Blast2go	chloroplast	GO:0009507	Cellular Component	94%
Blast2go	plasma membrane	GO:0005886	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Blast2go	Mitochondrial carrier protein	IPR002067	-	94%
Blast2go	Adenine nucleotide translocator 1	IPR002113	-	94%
Blast2go	Mitochondrial substrate/solute carrier	IPR018108	-	94%
Blast2go	Mitochondrial carrier domain	IPR023395	-	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVC6

Fln msg: Overlapping hits, possible frame ERROR between 960 and 935,

Fln protein: MAERPKYPSVVQKMSYHQTYLGSRITPSWQAHQNGALQPFKYDGALSAPVQSYGGFQSAFLHASRASNVALAPAHSSVFIPAPAEKGFTGFMIDFLMGGVSAAVSKTAAAPIERVKLLIPNQDEMLKSGRLAEPYKGIGDCFAKTMKDEGVIALWRGNTANVIRYFPTQALNFAFKDYFKRTTxxxxxxxxxxYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDNKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGDLQNNFLASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFKQIVQNEGSKSLFKGAGANILRAIAGAGVLAGYDQLQLLLLGKKFGSGGG*

Protein Length: 395

Fln nts: TTTCTCTGTTCCATACAACTGGAGTTCCGTCAGCCACTGGCAGTCAAAGGGCCTCTTAACTAATTGCCCCCCGTTTTGGTCAAAAGGCAGCTGGCCGATCTTCTTTCCCAAAAATAAGATCGATCGTAGGGCCTACGAACTATGTGAGATGCAAGGGCGTTAAGGACGGACACCAATTTAACATGGAGGTGGGATGTTAAAGCCGTGGTGTTGGTTATACGAGGAGTTAGGGCTTCTTAGGGCAAAGACGAAGGAGAGGAGCAGCGGTGCGTAATATCTTAAGATCGTGCAGCGGCAGGGCTCCTTCCGTCGGGAGCTCGGCCTCTTTTGGATGCGCCTTGTCTCGTTTGCCAGATATTGAACGGTAAATCTTGACAGGTTAAA_-_ATGGCAGAGCGGCCCAAGTATCCTTCTGTTGTACAGAAGATGTCTTATCATCAAACCTATCTTGGTTCGAGGATTACACCAAGCTGGCAAGCTCACCAGAATGGTGCTCTTCAGCCCTTTAAGTATGATGGAGCATTGTCGGCCCCTGTCCAGAGTTACGGTGGCTTCCAGAGTGCATTTTTGCATGCTTCTCGTGCAAGCAATGTAGCTTTGGCTCCCGCCCATTCATCTGTCTTTATTCCAGCGCCTGCAGAGAAAGGTTTTACTGGTTTCATGATTGACTTTCTCATGGGAGGGGTTTCTGCTGCAGTATCCAAAACTGCAGCTGCCCCTATTGAGCGTGTCAAACTATTGATACCAAACCAGGATGAAATGTTGAAGTCTGGACGTCTTGCTGAACCATACAAAGGGATTGGGGATTGTTTTGCTAAGACAATGAAGGATGAAGGTGTCATTGCGTTATGGAGAGGAAACACTGCAAATGTTATCCGTTATTTTCCCACTCAGGCTTTGAACTTTGCGTTCAAGGATTACTTTAAGAGAACTACTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTACTGGAAATGGTTTGCTGGAAACCTGGCCTCTGGTGGTGCAGCTGGTGCATCTTCTCTCCTTTTTGTTTATTCTTTGGACTATGCTCGAACTCGGCTGGCCAATGATAACAAGGCTGCAAAGAAGGGAGGGGAGAGGCAATTTAATGGGCTTATTGATGTCTACAAGAAAACATTGAAATCTGATGGAATTGCTGGTCTCTATCGTGGGTTCAACATTTCTTGTGTGGGAATTATAGTCTATCGTGGTTTATACTTTGGAATGTATGATTCTCTGAAGCCTGTTGTTTTGACTGGTGATCTTCAGAATAACTTCCTTGCAAGTTTTCTTCTTGGTTGGGGTATTACAATTGGTGCTGGTCTTGCATCGTATCCTATAGATACTGTACGAAGAAGAATGATGATGACTTCCGGTGAGGCAGTTAAGTACAAAAGTTCGTTGGACGCATTTAAACAGATTGTCCAAAACGAAGGTTCCAAGTCACTCTTCAAGGGTGCAGGTGCAAATATCCTCCGTGCTATTGCCGGGGCTGGTGTGTTAGCTGGATATGACCAGTTGCAGTTACTTCTTCTTGGGAAGAAATTTGGCTCTGGCGGTGGCTAA___TATGGATTTGATGATGGTGATAAATATTTAAGACAATGTTTGGACACTAATTTTTAGGATTTTTTGAATAATGAGTTTTGGATTATAGTACAATTTTTAGCGGAGTATTGAACTGCATATGAGGTCATCATCTGGAATTTGCAGAGGATAACTCATTGTGCGATGAACAATTTTCTT

Fln Alignment:

sp_v1.1_unigene25808___MAERPKYPSVVQKMSYHQTYLGSRITPSWQAHQNGALQPFKYDGALSAPVQSYGGFQSAFLHASRASNVALAPAHSSVFIPAPAEKGFTGFMIDFLMGGVSAAVSKTAAAPIERVKLLIPNQDEMLKSGRLAEPYKGIGDCFAKTMKDEGVIALWRGNTANVIRYFPTQALNFAFKDYFKRTxxxxxxxxxxWKWFAGNXXXXXXXXXXXXLFVYSLDYARTRLANDNKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGDLQNNFLASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFKQIVQNEGSKSLFKGAGANILRAIAGAGVLA
A9NVC6_______________MAERPKYPSVVQKMSC-QTYLGSRITPSWQVRQNGALQPFKYDGALSAPVQSYGGLQSAFLHASRASNVALAPGHSPVFIPAPAEKGFKGFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKSGRLAEPYKGIGDCFGRTIKDEGFIALWRGNTANVIRYFPTQALNFAFKDYFKRLxxxxxxxxxxWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDSKAAKKGGERQFNGLVDVYKKTLKSDGVAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGDLQDNFLASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFNQIVKNEGTKSLFKGAGANILRAIAGAGVLA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1000			66	33	0.997452
1001			33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain