SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25777

Length: 1364 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene25777 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L24, putative; K02896 large subunit ribosomal protein L24e	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	82%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKH8

Fln msg:

Fln protein: MKLEKCWYCSSTIYPGHGIQFVRNDCKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRKLHGKDLTKDTTFEFERRRNRPERYDRNVVQNTLKAIKKIEEVRISREAKLWENRMKGNKAKQMKEDTGELEQGIHLVKAPLAMQEEPGLALPRKAKIMRVKVSISKQQKEIVDDRI*

Protein Length: 175

Fln nts: CCAGTGAGCATAATAGCAAACCTATGACCAGAACCAGCTTTACAGTGGAAGAAATCAAAGAACCCTTAACATGAGCATGCGGCGAATTGGGCTGAACTGTGCAAGTTCCCAGATACAGCCCACACAATCCAGGGTTCCCACTCTGGTACTAGCGATGTTGACAGTTTTGGTGTTATCCCTTATAAACACTTTCAACTTTGTGGCTGCTAAGTGATGCCCTTAATTGCTGCCTTTATGACTACTGAAGTTCTCTCCAGCCACTAAATCCATTGCTTTTCCTTAATCACAGCTTAGACACAGGAAGGGTTAGGACTAGCGCGAGGAGCACAGCCAAGCA_-_ATGAAGCTCGAGAAGTGTTGGTACTGTTCGTCTACAATTTATCCCGGTCATGGGATCCAATTCGTGCGCAATGATTGCAAGATATTCCGGTTTTGCCGTTCCAAATGTCATAAGAATTTCAAAATGAAACGTAACCCTCGAAAGGTGAAGTGGACTAAAGCATACAGAAAGCTACACGGAAAAGACCTTACTAAGGACACAACGTTTGAGTTTGAGAGAAGAAGAAACAGGCCCGAGAGATACGATAGAAATGTTGTTCAAAATACCTTGAAGGCCATCAAGAAGATTGAGGAAGTTCGTATTAGCAGGGAGGCTAAATTATGGGAGAACAGGATGAAGGGCAATAAAGCTAAACAAATGAAAGAGGATACTGGAGAATTGGAGCAGGGCATTCATTTGGTGAAAGCTCCTCTTGCCATGCAAGAAGAACCTGGGCTTGCTTTGCCAAGAAAGGCAAAGATTATGAGAGTTAAAGTTTCCATCTCTAAGCAACAAAAAGAGATTGTGGATGACAGAATATAG___GCGGGCATAATCATCCATACTTATGGGGAGATTGTGGATGTTAAGATTTATTATTATCCACTCCAGTTTCTCGACAGTATTCATTGGGAAAGTGTACATAATTTTACTGGCCACTCTCTCTTCATTTTCCAACTGTAGTTTAACCATGTTCTGTCAGTATGCCCCTGGCTGCTGATCATGTTGCCAAGGTGCTGCATCCCATTTTGCCTCCGTTGCCTTTATTCTCAACTTATTAGGGCATCTGTGTTAATATTTTCACAATGTCTACATTGGGCACAACATCCATGGCTGTCTGTAGCCTGGCCTGCAACACATGGGCAATTTTTAACATTCTTTCTTTCTTGTCTATTTGGTGTTTCGAACTCCCTTTCACAATACCAATGCTTGTAGATTTTGCACCTTCCCTATTTTTAAATTCCTTCTGTTAGTATTAGTTGGATTTTACCAGTGGTAGTTGGATTTTGCCAGCTAAAACGCTATCCGAAAATGTTTGTAAAACTTGACG

Fln Alignment:

sp_v1.1_unigene25777___MKLEKCWYCSSTIYPGHGIQFVRNDCKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRKLHGKDLTKXXXXXXXXXXXXXXXXXXNVVQNTLKAIKKIEEVRISREAKLWENRMKGNKAKQMKEDTGELEQGIHLVKAPLAMQEEPGLALPRKAKIMRVKVSISKQQKE
A9NKH8_______________MRLEKCWFCSSTIYPGHGIQYVRNDCKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRKLHGKELTKDTTFEFERRRNRPERYDRNVVQNTLKAIKKIEEVRVSREAKLWENRMKGNKAKQIKEDARELEQGIHLIKAPLAMQEEPGLTLPTKAEKMKVKVSISKQQKE

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
370	90			10	0.90298
371		90	10		0.90298
379	90	10			0.90298
381	90		10		0.90298
382		10		90	0.90298
383		10	90		0.90298
385	90			10	0.90298
389	80			20	0.999996
390		10	90		0.90298
399	10		90		0.90298
400			10	90	0.90298
401	90		10		0.90298
402	90			10	0.90298
403	90	10			0.90298
405		10		90	0.90298
406			10	90	0.90298
408		10		90	0.90298
437	83		16		0.994512
477		16		83	0.994512
478	16			16	0.988813
483	83	16			0.994512
484		16		83	0.994512
487	16		83		0.994512
525	80	20			0.995493
576			25	75	0.996473
683			40	60	1.0
854	88		11		0.923564
1059			88	11	0.923564
1105		10		90	0.90298
1106		10		90	0.90298
1108	10		90		0.90298
1109	10			90	0.90298
1110		10	90		0.90298
1111		10	90		0.90298
1113	10			90	0.90298
1114		20	80		0.999996
1115		10	90		0.90298
1116	90	10			0.90298
1117			90	10	0.90298
1118	90			10	0.90298
1119			90	10	0.90298
1126	77		22		0.999999
1130		33	44		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
163	175	AAGA AAGA AAGA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain