SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25745

Length: 1526 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25745

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LQY6_ARALY	-	-	5.0e-16	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	leucine-rich repeat family protein	-	-	4.87267e-40	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	4.87267e-40	71%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPL6

Fln msg: W1: There is no M at the beginning,

Fln protein: EKLEWLQKVLFPMRRAFIDLATRIRIRKSGGGLLKLQNDVQRCGYEDVQVMWEMLKKTESPSSEKRGRSLWRLWTWAGRTASLRRVQRSN*

Protein Length: 92

Fln nts: GGGATGTGGAGGCTCTCAAAGCCCTAAAGAATTCAGTGGATGCGAATTCTATTCAAGCCGGATCGTCTCTCAGCTCCTGGAATTTTTCAGCAGATCACTGCGATTCTGCCTTTGGCAAGCTTTTCACCTGTGGCTTGAGATGCGATGGAGGGAGAGTCATAGAAGTGACTCTGGACGAGTCGGGATATAATGGTACTCTGCCGCCTGAAGTCGGCTTTATTCAAGGACTTGTCAAGAGCCACGGGGATTGTTGGTTGGGTGGTGTTCAGTCTCACTAAATTTGCTCACGGGCCAGCCAGGCCCAAGATTTGGGTATTCACTATTCATAGTATCTGTGGAGGGGTTGGATTCCTTTTCCTGGAGCTCGGCCTTCATTATCAGGATAAGGATTTCAAGGGTTGCAGGAGAGGAATTTTTGAATTTGATTTCAAGGGTTGCTGGAGAGGAATCTCTGAATTTCTGTTTGTTTCTTCACACTGCAAGTAGCACTATAAGAATCCCTAGGAAAAATTGGAGTGGTTGCAGAAGGTTTTATTTCCCATGAGGAGGGCCTTTATCGATCTCGCCACTCGGATTCGAATTCGAAAATCTGGAGGAGGACTTTTGAAGCTCCAGAATGATGTGCAGAGGTGTGGCTATGAGGATGTGCAAGTAATGTGGGAGATGCTGAAGAAAACAGAATCCCCAAGTTCTGAAAAAAGGGGGCGTTCATTGTGGCGATTGTGGACATGGGCTGGACGCACAGCTTCCTTGAGGCGAGTTCAAAGGTCAAATTGA___AATGAAAGATCTCCTTTCATTCCTTTCATAAAATGTGGACCTGTTAATTTGTCGATAGTAAGCCATGGTTATCATAGGTCACTCTCTCTATCTATCTATATAAGTATACATGCTTGCTTCACCCTTCATGTCCCTCAGATCTAAGGCCCTATCCTGGTCTGCTGGGCGAGGGTATGATGTATATTGTGATTTGGGATATGAGGCAAGCCCTATACATATATCTATGCTTGGAGAATTTAAAAAAATGCCTCTTTGAGCAACCAAAGTGTTGAAGAGGCGGAGAGGGAAAAGAAAAATTTGATGGAGGTAAATACCTGCTGAAAATTTAGAGCACATAATTAGGTTTGTGCCCAGCTCCGAGGAGATCTAGAGGCTGGTAACAATTATGTTATGTATAGGAAGTATGGATTTTTCTCAAATAAAATTCTCAGATCTTTTGTTTTGAACTGGGTCTATTGAATGACTGGAATGTATGGCTATACAGTTAGTTTTCAAGTTAATAAGCTTAGTTTCTGTATGTTTACAGTTAGGATCTCTTTGGAAATAAACCTTTTCATTAAAAGGTACTTAATGGCGATACTTGTGCAAATTTTAATGGCAAACTAATGATAAGAACAGGGATGTGTTTCAGTGCGTATTTAGTCCCAGAAGCTTTAGAAGAGATAAAATCATAAATATTAGGCCACTGTTATAAGGATTTGAATTTCTTTTGTTCAACTCCAAATGGAAAGACAATTACAACTTTCTGT

Fln Alignment:

sp_v1.1_unigene25745___LEWLQKVLFPMRRAFIDLATRIRIRKSGGGLLKLQNDVQRCGYEDVQVMWEMLKKTESPSSEKRGRSLWRLWTWAGRTASLRRVQRSN
A9NPL6_______________MEWLQKVLFPMRRAILDLATRIRIRKSGGGLLKLQNDVQRCSYEDVQVMWEMLKKTESPSCEKRGRSLWRLWTWAGRTASLGQVQRSN

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
60		66		33	0.997452
341		50	50		1.0
430	66	33			0.997452
451		66		33	0.997452
512	33			66	0.997452
521			33	66	0.997452
537		33		66	0.997452
546			66	33	0.997452
571		33		66	0.997452
637		33		33	0.997753
664	33		66		0.997452
687	33	66			0.997452
692		33		66	0.997452
693		66		33	0.997452
694			33	66	0.997452
695	33		66		0.997452
701	66		33		0.997452
756		73	26		1.0
1017	88			11	0.923564
1056		50	50		1.0
1172		66		33	0.997452
1189		10		90	0.90298
1190			11	88	0.923564
1194		88	11		0.923564
1196	88	11			0.923564
1197	88	11			0.923564
1199	88			11	0.923564
1200	88		11		0.923564
1201	88		11		0.923564
1202	88	11			0.923564
1204			11	88	0.923564
1209		12	87		0.992554
1213	33			66	0.997452
1271	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
864	876	TCTA TCTA TCTA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain