SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25738

Length: 1358 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25738

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	hydrolase, hydrolyzing O-glycosyl compounds (EC:2.4.1.82)	-	-	60%
FL-Next	sp=Probable galactinol--sucrose galactosyltransferase 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	59%
Blast2go	galactinol--sucrose galactosyltransferase 6	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cold	GO:0009409	Biological Process	0.0	76%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Raffinose synthase	IPR008811	-	0.0	76%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	0.0	76%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q8RX87

Fln msg: Distance to subject end: 506 aas, your sequence is shorter than subject: 232 - 749

Fln protein: MTITSGVTLADGQLFVRHKRVLSGVPENVLLTSASGIGHADGVFIGALCSETNSRHVVPLGTLENVRFLACFRFKLWWMSQKMGSSGKEIPMETQFLLLENKADEEGEETIYTVFLPLVEGSFRACLQGNENDALELCLESGDPAVEELSFTHSLLINAGTDPFKVITDGIKSVELHLQTFRHREEKKMPGIVDWFGWCTWDAFYTAVSAEGVEQGLKSLSEGGTPPRFVII

Protein Length: 233

Fln nts: ATGGGGGCCTTGTGCCTTCTGTCTGAAAGTGAAAGGGCACAGAGCCGTTCCAAGTTCACGCTCATAAGCGACGTGTGCCGTGGGGGATTCGATCTCGGGCGGGCAGGGGCCGAGTCACTGGACATATTTTTTAAATGTTTGTTGGAAGGTTTGGTTTTTCGATGTAAGGGATTGGAATTTGGATAGGGAAGACAACTATGTTCTCGGTGCCAGATGGACATGACGGGGATCCCAGTCGTCACAATGGAATTGACTTCTTGAGGTTAACCAGTGAAGGACCTATCTGACGTCAAAGATTACTGCGTTTGACGTGTAAAGCTGAACGCCGTTGGTGGGAGTTGAGTGGGAAGAAGGAAAGGATAATGATTCGAGGGATGAGAGAGATTTCAGGGCTGAAGGCACGCTGGCGCCAGCTATAAATTCTGTGAAGCTGAGAGCCGCACTCGCATTCTTGTGTGTGCGTCTAACGTGATAAGCTTCCCTCGGAGGACCAAGGTTTTGATGTTCGCCTCCCTTCATTTTGATCTGTTTCTTCGTTTTCATTTTGCGCAAAAGCTCCATTAATCGGTCATTCTTTCGGCGATTTCTTGTTTTCACGGGACGCATTTTCTGTATGTGCGCACACAGCGGCTGCTTTTAAGAAATCTGTAGCATTTCAAT_-_ATGACAATCACCTCAGGTGTCACACTCGCCGATGGGCAACTATTTGTCCGTCACAAGCGGGTTCTCTCAGGCGTTCCGGAAAATGTGCTGTTGACTTCTGCTTCAGGCATCGGCCACGCAGACGGTGTATTCATCGGAGCTTTGTGTTCGGAGACTAACAGTCGCCATGTCGTTCCTCTTGGCACTCTTGAGAATGTTAGATTCCTGGCTTGTTTCCGCTTCAAACTTTGGTGGATGTCCCAAAAAATGGGAAGTTCGGGAAAGGAAATTCCTATGGAGACTCAATTTTTGCTATTGGAAAACAAGGCTGATGAGGAGGGAGAGGAGACAATATATACTGTTTTCTTGCCTCTTGTGGAGGGTTCCTTCAGGGCATGTTTACAAGGAAACGAAAATGATGCATTGGAGCTCTGCTTAGAGAGTGGGGATCCTGCCGTGGAAGAATTGTCCTTTACACATTCGCTGCTTATTAATGCCGGAACAGACCCTTTTAAAGTGATTACAGATGGAATAAAGTCTGTGGAACTTCACTTGCAGACATTCCGTCACAGAGAGGAGAAAAAGATGCCTGGCATTGTTGACTGGTTTGGATGGTGTACTTGGGATGCCTTTTATACAGCTGTTTCAGCAGAGGGTGTAGAACAGGGGCTAAAGAGCTTGTCAGAAGGAGGCACCCCGCCACGTTTTGTCATCATTGA

Fln Alignment:

sp_v1.1_unigene25738___MTITSGVTLADGQLFVRHKRVLSGVPENVLLTSASGIGHADGVFIGALCSETNSRHVVPLGTLENVRFLACFRFKLWWMSQKMGSSGKEIPMETQFLLLENKADE----------EGEETIYTVFLPLVEGSFRACLQGNENDALELCLESGDPAVEELSFTHSLLINAGTDPFKVITDGIKSVELHLQTFRHREEKKMPGIVDWFGWCTWDAFYTAVSAEGVEQGLKSLSEGGTPPRFVII
Q8RX87_______________MTIKPAVRISDGNLIIKNRTILTGVPDNVITTSASEAGPVEGVFVGAVFNKEESKHIVPIGTLRNSRFMSCFRFKLWWMAQRMGEMGRDIPYETQFLLVESNDGSHLESDGANGVECNQKVYTVFLPLIEGSFRSCLQGNVNDEVELCLESGDVDTKRSSFTHSLYIHAGTDPFQTITDAIRTVKLHLNSFRQRHEKKLPGIVDYFGWCTWDAFYQEVTQEGVEAGLKSLAAGGTPPKFVII

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
617		50		50	1.0
667	83		16		0.994512
764	12	87			0.992554
766	12		87		0.992554
767		12	87		0.992554
768	12	87			0.992554
795	16	83			0.999991
801			16	83	0.999991
873	11			88	0.923564
874			11	88	0.923564
876		88	11		0.923564
877	11	88			0.923564
879		88		11	0.923564
880			11	88	0.923564
881	11			88	0.923564
884	88		11		0.923564
885	44		55		1.0
887		11		88	0.923564
998		83	16		0.994512
1049	50	50			1.0
1050		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain