SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25733

Length: 1541 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25733

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA binding protein, putative	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	dna binding	-	-	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF296	IPR005175	-	0.0	75%
Blast2go	AT hook, DNA-binding motif	IPR017956	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAC5

Fln msg:

Fln protein: MEGRDSMGMPSQGPFARSNAAPNAIVIHGVSNVNSLKRKRGRPRKYGPDGSMALALSPFPAHPGMTGSSSQKRGRGRPPGTGRKQQLAALGSAGVGFTPHVITIAAGEDVATKIMSFSQQGPRAVCILSANGAISNVTVRQPAASGGTVTYEGRFDIVSLSGSFLLTENNGARSRTGGLSISLAGPDGRVVGGVVAGMLMAASPVQVIAGSFILDGKKVQGKPENPLSSLGLPHVASSGHLGAKHGGPGGPPFNSSSGASGINSVGQQSTQNMPAFQPMGWRGSHSMGEQRHTTNVNISLPCG*

Protein Length: 305

Fln nts: ATGGGGAATAGAGCATTTCGACGTCGAAGAAAGGGTGAAAAACCCATAAACGAAAACGACGCATTTGGCATCTGGTCACATGGACCAACAAAGCCGCTGGATATCGCAATCCCATTCGAAATCCTGTACCCGCAAGAGGCTCTTAGCTACGGCACTCCTTCGATTGCTCATGGGCGCCAAAGCCTGCAATTTCCAGCGAAAAGCCATGAAAGAAATGCATTATTTCACTCCCAAAGTCAATTTCATTTTACGAAACCCTCTTCGTCAAACCCTCAGATGAACCAGGGTTCGAATCCCCGAGCTCTGTAAATTGAGATCACCGGAGCCATTTCACAGGGAAAAAATTCATTAGACCGAATTCTATGTATCC_-_ATGGAAGGCAGGGACTCAATGGGTATGCCTTCACAGGGGCCTTTTGCCAGGTCGAATGCAGCACCCAACGCCATTGTAATACACGGGGTTTCAAATGTGAACAGCTTGAAGAGGAAAAGAGGGAGACCGAGGAAATACGGGCCAGACGGTAGCATGGCATTGGCTCTGTCCCCTTTCCCTGCACATCCCGGGATGACGGGTTCTTCTTCACAAAAGAGGGGTAGAGGGCGTCCACCTGGCACTGGTAGAAAACAGCAATTGGCTGCACTTGGCTCAGCGGGGGTTGGCTTTACTCCACATGTTATTACCATAGCAGCCGGCGAGGATGTTGCAACAAAAATAATGTCATTTTCGCAACAAGGGCCTCGTGCAGTTTGCATTCTTTCAGCAAATGGTGCAATCTCTAATGTGACTGTTCGCCAACCTGCTGCTTCCGGGGGTACAGTGACATATGAGGGCCGCTTTGATATTGTCTCCTTGTCAGGCTCGTTCTTGTTAACAGAGAATAATGGGGCACGCAGTAGAACAGGTGGGCTGAGTATTTCATTGGCTGGCCCTGATGGTCGTGTTGTTGGTGGAGTTGTAGCTGGAATGTTAATGGCTGCCAGTCCAGTTCAGGTGATTGCAGGGAGCTTTATTTTGGATGGGAAAAAGGTTCAAGGCAAGCCCGAGAATCCTTTATCTTCATTAGGTTTGCCACATGTAGCTTCTTCTGGACATTTGGGAGCTAAACATGGCGGTCCGGGTGGTCCTCCATTCAACTCAAGCTCTGGGGCTTCTGGTATTAATAGTGTTGGTCAACAATCAACTCAGAACATGCCTGCTTTTCAGCCAATGGGTTGGCGAGGTTCCCACTCTATGGGAGAGCAAAGGCATACTACAAATGTTAATATATCTTTGCCTTGTGGATAG___TTGTATGATGGCTGGAACCTTTTCATGGCTAGATTATTTGTTGTCCGCATTTTTTAGTTTAAACAGGCTAACAACCAAGGGCCATTAGCTGTGCTATGATTGTTATTATCAGCACATTTTGAATCTTGCCAAAATAAGTTAACTTTTCCAGGCTCTTGCAAGCTAACAAAAAGACAATGAAAGATTCTTAGATCAGGTGTAATGGCTGTAGATATTCTCAACCTTCTCACGTAATATATAATTCCTAGTTTGTATTAAG

Fln Alignment:

sp_v1.1_unigene25733___MEGRDSMGMPSQGPFARSNAAPNAIVIHGVSNVNSLXXXXXXXXXXXXDGSMALALSPFPAHPGMTGSSSQKXXXXXXXXXXXKQQLAALGSAGVGFTPHVITIAAGEDVATKIMSFSQQGPRAVCILSANGAISNVTVRQPAASGGTVTYEGRFDIVSLSGSFLLTENNGARSRTGGLSISLXXXXXXXXXXXXXXXXXXXSPVQVIAGSFILDGKKVQGKPENPLSSLGLPHVASSGHLGAKHXXXXXXXXXXXXXXXXINSVGQQSTQNMPAFQPMGWRGSHSMGEQRHTTNVNISLPCG
D5AAC5_______________MEGRDSMGLPSHGPFARSNAAPNAIVIHGASNVNTMKRKRGRPRKYGPDGSMALALSPFSALPGMTGSSSQKRGRGRPPGTGRKQQLAALGSAGVGFTPHVITIAAGEDVATKIMSFSQQGPRAVCILSANGAISNVTVRQPAASGGTVTYEGRFDIVSLSGSFLLMENNGAR-RTGGLSISLAGPDGRVVGGVVAGMLMAASPVQVIAGSFILDSKKGQGKPENPVSSSGLPHVAASGHLGAKHGGPGSSPFNPSSGASAINSVGQQSTQNLSAFQSMGWRGSHSMGEQRHTTNVNISLPCG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
340	12		87		0.992554
888	80		20		0.995493
979	83	16			0.994512
983		83	16		0.994512
984	83			16	0.994512
986	16			83	0.994512
987		16		83	0.994512
989	83			16	0.994512
1002		16	83		0.994512
1003	83			16	0.994512
1006		16		83	0.994512
1008		16		83	0.994512
1154	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain