SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25722

Length: 1007 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25722

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoglycerate kinase n=1 Tax=Picea sitchensis RepID=B8LKQ1_PICSI	-	-	76%
FL-Next	sp=Phosphoglycerate kinase; Pinus pinaster (Maritime pine).	-	-	96%
Blast2go	phosphoglycerate kinase	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	86%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	86%
Blast2go	cell wall	GO:0005618	Cellular Component	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%
Blast2go	thylakoid	GO:0009579	Cellular Component	86%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	86%
Blast2go	membrane	GO:0016020	Cellular Component	86%
Blast2go	nucleus	GO:0005634	Cellular Component	86%
Blast2go	stromule	GO:0010319	Cellular Component	86%
Blast2go	apoplast	GO:0048046	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	Phosphoglycerate kinase	IPR001576	-	86%
Blast2go	Phosphoglycerate kinase, N-terminal	IPR015824	-	86%
Blast2go	Phosphoglycerate kinase, conserved site	IPR015911	-	86%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: F4MKM1

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 213 aas, your sequence is shorter than subject: 263 - 507

Fln protein: MASATAAAAALGRIASTPNLQAVSSSSTSSPVARLAIGSRSWSASPHRRLRSIASSPLLEVKSRFGLGAASNLFASENDLASAVAAQVGGANNGRGCRGVVSMAKRSVGDLKESDLKGKKVFVRADLNVPLDENQNITDDTRIRAAVPTIKYLISNGAKVILTSHLGRPKGVTPKYSLKPLVPRLTELLGVNVVKADDCIGAEVEKAVASLxxxxxxxxxGTAHRAHASTEGVTKYLKPAVAGFLLQKVSCLFLLCSGQCTCL

Protein Length: 264

Fln nts: ATGGGGTTGGCGTGTAGTTCACCCATGAGTTGGAGAATAAACTAATTCCCTAGCTTCTGTCACATATAAAAGACAACACCTGCCATTTAGTGGCCGCCATCGTGAACCTCACATGAGAGATAAGCAGGTCCCATCATCGATCTTAAAGCTACCCACTGAACGCGCATCTGAAAACCCCACGAGTCTTCCGAGTTCTGTCTGAAAACTGCGTAGGTAACA_-_ATGGCTTCAGCAACCGCAGCTGCTGCAGCGCTCGGTCGAATTGCATCGACACCAAATCTGCAAGCCGTGTCATCGTCGTCCACTTCTTCTCCCGTGGCCCGCCTCGCCATTGGATCCAGATCGTGGTCCGCCTCTCCTCACCGCCGGCTCCGTTCTATTGCCTCCTCGCCCCTGCTGGAGGTCAAGTCCAGGTTTGGATTGGGCGCCGCTTCCAACCTGTTTGCCTCTGAGAATGATCTGGCCTCCGCTGTCGCAGCGCAGGTTGGTGGCGCCAACAATGGCAGGGGCTGCCGAGGAGTTGTCTCCATGGCCAAGAGGAGTGTCGGGGATTTGAAGGAATCCGATCTTAAGGGCAAGAAGGTTTTTGTCCGGGCCGATTTGAATGTCCCCCTCGATGAAAATCAGAACATCACCGATGATACGCGTATCAGGGCCGCCGTTCCTACCATCAAGTACTTAATCAGCAACGGTGCCAAGGTTATTCTTACAAGTCACCTTGGTCGTCCTAAGGGTGTCACACCAAAGTACAGCTTGAAGCCTCTTGTGCCCAGGCTTACAGAGTTGCTTGGGGTGAATGTGGTAAAAGCAGATGATTGTATTGGAGCGGAAGTAGAAAAAGCAGTGGCATCTCTTxxxxxxxxxxxxxxxxxxxxxxxxxxxGGTACAGCTCACAGAGCACATGCGTCAACGGAAGGTGTTACTAAATATCTCAAACCAGCTGTTGCTGGTTTCCTTCTGCAGAAGGTAAGTTGCCTTTTCTTACTCTGTTCAGGACAGTGCACATGTCTG

Fln Alignment:

sp_v1.1_unigene25722___LGRIASTPNLQAVXXXXXXXPVARLAIGSRSWSASPHRRLRSIASSPLLEVKSRFGLGAASNLFASENDLASXXXXXXXXXXXXXXCRGVVSMAKRSVGDLKESDLKGKKVFVRADLNVPLDENQNITDDTRIRAAVPTIKYLISNGAKVILTSHLGRPKGVTPKYSLKPLVPRLTELLGVNVVKADDCIGAEVEKAVASLQTFMLMMLxxxxxxxxxxxxxxxxxxxxxxxxDLYVNDAFGTAHRAHASTEGVTKYLKPAVAGFLLQK
F4MKM1_______________LGRIASTPNLQAVSSSSTSSPVARLAIGSRSWSASPHRRLRSIASSPLLEVKSRFGLGAASNLFASENDLASAVAAQVGGANNGRGCRGVVSMAKRSVGDLKESDLKGKKVFVRADLNVPLDENQNITDDTRIRAAVPTIKYLISNGAKVILTSHLGRPKGVTPKYSLKPLVPRLTELLGVNVVKADDCIGAEVEKAVASLPNGGVLLLxxxxxxxxxxxxxxxxxxxxxxxxDLYVNDAFGTAHRAHASTEGVTKYLKPAVAGFLLQK

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
479	95		4		0.99692
557	93	6			0.99903
558	93		6		0.99903
561		93		6	0.99903
564		6		93	0.999153
568	93		6		0.999364
569	93	6			0.999364
570			92	7	0.999532
572			92	7	0.999532
575	92	7			0.999532
576			92	7	0.999664
577	92	8			0.999718

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain