SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25713

Length: 1456 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25713

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-apiose/xylose synthase (EC:4.1.1.35); K12449 UDP-apiose/xylose synthase	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	88%
Blast2go	udp-d-apiose udp-d-xylose synthase 1	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	UDP-glucuronate decarboxylase.	EC:4.1.1.35	-	0.0	92%

Source	KEGGs	Term	Identity
Blast2go	Starch and sucrose metabolism	00500	92%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	92%
Blast2go	Metabolic pathways	01100	92%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide-sugar biosynthetic process	GO:0009226	Biological Process	92%
Blast2go	UDP-glucuronate decarboxylase activity	GO:0048040	Molecular Function	92%
Blast2go	NAD binding	GO:0051287	Molecular Function	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	92%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7TU58

Fln msg:

Fln protein: MAVRRIDLDGGEILPMTICMIGAGGFIGSHLCEKLMHETDHTVLAIDVYSDKIQHLLEPGHPWSGRIEFHRINIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVRYCSENSKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAFYVLKEDVSPCIFGPIEKQRWSYACAKQLIERVIYAEGAENGLEFTIVRPFNWIGPRMDFIPGVDGPSEGVPRVLACFSNGLLRGEPLKLVDGGQSQRTFLYIKDAIEAVLLMIENPSRANGHIFNVGNPNNEATVKQLAEMMTEVYSKVSGQPPLEEPTVDISSQEFYGEGYDDSDKRIPDMTIIKERLGWDPKTSLWDLLDYTLTYQHKTYSQAVKQAMSTSIATS*

Protein Length: 389

Fln nts: ACCCTGAGCTGCGGAGAATACATTGAGAGTTTGTGTTCATCTTCTTGTTGCTGAGATATCTTTCTATTCTATCTACTACCTGAGCA_-_ATGGCGGTGCGGAGGATTGATCTTGATGGAGGTGAGATCTTGCCGATGACGATCTGCATGATCGGGGCGGGAGGCTTCATCGGTTCGCATCTGTGCGAGAAGCTGATGCACGAGACGGATCACACAGTGCTCGCCATTGATGTTTACAGCGACAAGATCCAGCATCTCTTGGAGCCTGGTCACCCCTGGTCTGGCCGCATCGAGTTCCACAGGATAAATATCAAGCACGACTCCAGGCTTGAGGGGCTCATCAAGATGGCGGATCTGACAATCAATCTAGCTGCCATTTGTACACCTGCGGACTACAACACACGACCTCTTGATACCATATACAGCAATTTCATTGATGCTCTTCCTGTGGTTCGCTACTGCTCAGAAAACAGCAAGCGTTTGATTCACTTTTCCACCTGTGAGGTATATGGAAAGACAATCGGCAGCTTTCTCCCAAAAGATAGTCCTTTGCGACAGGATCCTGCCTTCTATGTCCTTAAAGAAGATGTATCTCCTTGCATCTTTGGCCCAATTGAGAAGCAGAGGTGGTCATATGCATGTGCAAAGCAACTAATCGAAAGAGTAATTTACGCTGAGGGCGCTGAGAACGGTTTGGAATTTACTATTGTGAGGCCATTTAACTGGATTGGTCCAAGGATGGATTTCATTCCAGGGGTTGATGGACCAAGTGAAGGTGTACCAAGGGTTCTTGCTTGCTTTAGCAATGGTCTCTTGCGTGGGGAGCCACTTAAACTTGTGGATGGGGGACAGTCACAACGTACTTTTCTCTACATTAAAGATGCGATTGAAGCTGTTCTCTTGATGATTGAAAATCCTTCAAGGGCAAACGGTCACATTTTCAATGTTGGCAATCCTAATAATGAAGCCACTGTCAAGCAGCTGGCGGAAATGATGACTGAGGTCTATTCTAAAGTAAGTGGACAACCTCCTTTGGAGGAGCCTACTGTTGACATAAGTTCTCAAGAATTCTACGGGGAGGGATATGATGACAGTGACAAGCGAATACCAGACATGACTATCATCAAGGAACGGCTTGGATGGGACCCAAAGACATCCTTATGGGATCTGCTCGACTACACACTGACATATCAGCATAAGACTTATTCCCAAGCAGTTAAACAGGCTATGTCTACATCCATTGCAACAAGCTAA___ATATCTAGTACTGATTTTTTTTGCATATTTGATTGACCTGTCAAGGGTTTTGAAAGGTTGATATATTAAATTTTTCATAGGTGCTCGTAATGTAGCACGTGGAATTATTCAAGTGTATTAAGATTTATTTTCAAGTTTACTGGTCTTGCCTAGAGTATGTGAAGCTGCGGAGAGCCAATTGCAGTTGGAATTTGTATTATATTTTT

Fln Alignment:

sp_v1.1_unigene25713___RIDLDGGEILPMTICMIGAGGFIGSHLCEKLMHETDHTVLAIDVYSDKIQHLLEPG-HPWSGRIEFHRINIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVRYCSENSKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAFYVLKEDVSPCIFGPIEKQRWSYACAKQLIERVIYAEGAENGLEFTIVRPFNWIGPRMDFIPGVDGPSEGVPRVLACFSNGLLRGEPLKLVDGGQSQRTFLYIKDAIEAVLLMIENPSRANGHIFNVGNPNNEATVKQLAEMMTEVYSKVSGQPPLEEPTVDISSQEFYGEGYDDSDKRIPDMTIIKERLGWDPKTSLWDLLDYTLTYQHKTYSQAVKQAM
D7TU58_______________RLDLDGNAIKPMTICMIGAGGFIGSHLCEKLMAETMHKVLAVDVYNDKIRHLLEPAAHPWSDRIQFHRINIKHDSRLEGLIKMADLTVNLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYLLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIDNPGRANGHIFNVGNPNNEATVKQLAEMMTEVYAKVSGEPSLEVPTVDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHRTYAEAIKQAI

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
653		66		33	0.997452
980		15		84	0.999986
982			84	15	0.999986
987	84	15			0.999986
988	84	15			0.999986
994	84		15		0.999986
998	84	15			0.999986
999	15		84		0.999986
1000		15	84		0.999986
1031		12		87	0.999964
1033			87	12	0.999964
1034	87	12			0.999964
1038		12	87		0.999964
1040		87		12	0.999964
1042	86		13		0.999973
1048		14	85		0.999981

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain