SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25701

Length: 1512 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25701

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PDTp; arogenate/prephenate dehydratase (EC:4.2.1.91)	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	pdr1	-	-	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Prephenate dehydratase	IPR001086	-	0.0	73%
Blast2go	Prephenate dehydratase, conserved site	IPR018528	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR98

Fln msg:

Fln protein: MAMALRCAYLPTREAQSLRSWDDSPRSCKLTRFAVTSELRTTRKTKPVFDPVKLPTVQRSDELLDRLERIYKEGMLGSNDVLLPMEPLWAGPVFKGKPMRVAYQGVRGSYCQEAAVRAFQRCDALPCEGAMDSAFEALESNDADRAVVPVENSLDGVIERNYDLMLRHPDLHVVGELLLPINHCLLAVRGMAKRRSLKTVVSHPQALAHCQQRLTALGVEVEVEAVDNAASAARFVAENRIDDTAVIGSQIAAREYGLEVVEEEIQDDSSNTTRFLILGKPNNKIKNSSALRGSKTTVAFALKEGTADLFKALSIFAVRDITVTKIESRPQRQKPLRMVTSEEQEGNSSKCYFEYVFFVDLEAPATDDNPDSLQRGLEQLRQISSFVRIVGSYSTISIVS*

Protein Length: 402

Fln nts: AGGTAAACATATTAATTACAGGCCT_-_ATGGCTATGGCTTTGAGATGTGCGTATCTCCCAACAAGGGAGGCGCAGAGCTTGAGATCCTGGGACGATTCTCCCCGATCCTGCAAACTCACCAGATTTGCTGTAACCAGTGAGTTGCGGACCACGCGGAAAACAAAGCCCGTGTTCGATCCTGTTAAGCTTCCTACTGTACAACGATCTGATGAGTTGTTGGATCGGCTGGAGCGTATTTACAAAGAGGGGATGCTGGGATCTAACGATGTGTTGCTCCCCATGGAGCCCCTGTGGGCGGGGCCGGTGTTTAAGGGAAAGCCGATGAGAGTCGCGTATCAGGGCGTGCGTGGTTCGTATTGCCAAGAGGCAGCGGTTCGAGCCTTCCAGAGGTGCGATGCGCTTCCCTGCGAAGGAGCCATGGACTCCGCCTTCGAGGCGCTGGAGTCCAACGACGCTGACCGAGCAGTTGTGCCGGTGGAGAACTCGCTGGACGGAGTCATCGAGAGGAACTACGATTTGATGCTACGCCATCCCGATCTCCATGTCGTGGGCGAGCTGCTGTTGCCCATTAATCATTGCTTGCTGGCTGTTAGAGGGATGGCCAAGAGGCGTAGTTTGAAGACCGTGGTCAGCCATCCGCAGGCGCTCGCTCATTGCCAGCAACGTCTCACGGCTCTTGGCGTGGAGGTGGAGGTGGAGGCCGTGGACAACGCTGCGAGCGCGGCTCGTTTTGTGGCGGAAAACCGCATCGACGACACGGCTGTCATTGGCAGTCAAATTGCGGCGCGGGAATACGGTCTTGAAGTGGTAGAAGAAGAAATACAGGACGACTCGTCAAATACCACCAGATTTCTAATTCTGGGGAAGCCCAACAACAAAATCAAGAACTCCTCCGCACTCCGCGGCTCCAAGACGACGGTGGCCTTCGCGTTGAAAGAGGGAACGGCGGATCTGTTCAAGGCGCTCTCAATATTCGCTGTGCGAGACATAACAGTGACAAAGATCGAATCCCGCCCGCAGCGCCAGAAGCCCCTGCGTATGGTGACGAGCGAAGAGCAAGAGGGGAACAGTTCCAAGTGTTATTTCGAGTACGTTTTCTTCGTAGATTTGGAGGCCCCGGCCACAGATGATAATCCTGATAGTTTGCAAAGAGGTCTAGAACAGCTAAGGCAGATTTCCAGTTTTGTGAGGATCGTTGGAAGCTATTCAACCATCTCCATCGTTTCATAG___CTCGAAACAACCAAACAAATCCGTGTTCTCTGCTGGGGATATTTGTATGCAGATTTGTATACTTGTAAAGTGTATATTCTGTTGAAGTAACAGATCGATGATTTCTGCAGTGTCATACATATGTAAATGCACGTGGAACTTCAGGATCCTCAAAATCGTGATGTGAACCGTCAACATGGTTAGATATTTGGCAAACCTCTGCTCGGATATAAATAAAAGCATGGTTTAGCTTTAAATAGTTATCTTATTATTCGTTATTCCTCATCATGAATTGATGTGCAATC

Fln Alignment:

sp_v1.1_unigene25701___MAMALRCAYLPTREAQSLRSWDDSPRSCKLTRFAVTSELRTTRKTKPVFDPVKLPTVQRSDEL----LDRLERIYKEGMLGSNDVLLPMEPLWAGPVFKGKPMRVAYQGVRGSYCQEAAVRAFQRCDALPCEGAMDSAFEALESNDADRAVVPVENSLDGVIERNYDLMLRHPDLHVVGELLLPINHCLLAVRGMAKRR-SLKTVVSHPQALAHCQQRLTALGXXXXXXXXXXXXXXXRFVAENRIDDTAVIGSQIAAREYGLEVVEEEIQDDSSNTTRFLILGKPNNKIKNSSALRGSKTTVAFALKEGTADLFKALSIFAVRDITVTKIESRPQRQKPLRMVTSEEQEGNSSKCYFEYVFFVDLEAPATDDNPDSLQRGLEQLRQISSFVRIVGSYSTISIVS
B8LR98_______________MAMAFRCAYLPTWETQLLSSPDDG--SCRRTKFAVTNALWTTRKTKPVFDPLKLPTVQRSGDLGTALLDRLERIYKEGMPGNNDGLLPMEPLWAGPLFQGKPMRVAYQGVRGSYCQEAAVRAFQRCDALPCEGGMDSAFEALESNDADRAVVPVENSLDGVIERNYDLMLRHPDLHVVGELLLPINHCLLAVRGAGKRSPAVKTVVSHPQALAHCQQRLVALGVQVEAVDNAARAA--RFVAENRLDDTAVIGSEIAGREYGLQVLEEEIQDDSSNTTRFLILSKPNNKNNNSSALPGSKTTVAFSLKEGTADLFKALSIFAVRDIEVTKIESRPQRKNPLRLVMNEEQDGGSSKCYFEYVFFVDLEVPATDDNPSSVKRALDQLRQISSFVRIVGSYSTISIVS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
792	80		20		0.995493
935	20		80		1.0
1237		88	11		0.923564
1244	85		14		0.993533
1266			71	28	1.0
1310		14	85		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
680	698	GTGGAG GTGGAG GTGGAG G	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain