SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25685

Length: 1823 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25685

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIFY8; TIFY8 (TIFY DOMAIN PROTEIN 8)	-	-	1.0e-18	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	protein	-	-	0.0	53%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	53%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tify	IPR010399	-	0.0	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLX7

Fln msg: your sequence is longer than subject: 441 - 406

Fln protein: MVGEGKPVFHDFLGMTFLSSESWGATATARHEEASRSTGVVDGIDHGSSSAGSRLLSGHLGLAVAAAAPCSSDPGSERMSCGKWEGIHGGMGALDSSRSVAGGKKRETSTSSLRESLQDTSESSRGIKMSRFESKDDRRGRHHDDDVLLGMQPPRPTATCQTSTRPSMGANADFMASKKWERPAFMNSGSTVYSPSRLTHLGSYQNKTSANLSRENTVVPALVSQTPADEGSRTGLKGSSLANVMNNGPSAPAARNTSGQSLSAGSSKFLPGNGVQESSIPASPKCITSASRQLTIFYAGQAHVFDDIHPTKADAILTLAGSNGRSWSTTYSTRPRSTLQSLATEGNVLSVEREKVGNRMTVNSSTGLDMPLELQALLPARTHAGQGNSRLGTNFLQFTTQNMQAAIGGNGHKDRTLMACPSTCSNEGDKETICNSQQLA*

Protein Length: 442

Fln nts: CCCAACGGCTGAAAGACAAAAGAGGCCGGCTGGGCTGTTAATGGTTATCTGACCTAGAGTGGTTTGCACATTAATGGTCCGGAGGCACAGAATTTGTGAAGTGTAGGCAGTTATTGTTGTAGTACTATGTCGGATTTTTGAGGGGGTGAAAACTGGGGATGTCGTGTTCTTGTAGTATATGTATGGACATGTGTTGTTATTATTATTATCATCATTGTCGTTATTATTAATGTCATC_-_ATGGTGGGCGAAGGGAAGCCCGTGTTCCATGACTTTCTTGGCATGACCTTCCTCAGCAGCGAATCATGGGGTGCTACTGCTACAGCTAGACATGAGGAGGCCTCCAGGAGCACAGGCGTCGTAGACGGAATCGACCATGGATCTTCCTCAGCGGGCAGCAGGCTCCTCTCAGGGCATCTCGGTTTAGCAGTAGCAGCAGCTGCTCCTTGTTCTTCAGATCCAGGATCAGAGAGGATGTCGTGTGGAAAGTGGGAAGGCATACATGGCGGCATGGGTGCTTTGGACAGCAGCAGATCGGTAGCAGGAGGGAAGAAGAGGGAAACTTCCACTTCGAGCCTTCGAGAGTCCTTGCAGGATACTTCAGAGAGTTCGCGTGGAATTAAGATGTCAAGGTTTGAGTCCAAAGATGACAGAAGAGGAAGGCACCATGACGATGATGTTCTTCTGGGCATGCAACCACCAAGGCCAACAGCCACATGCCAAACATCAACGAGGCCATCAATGGGTGCGAATGCTGATTTTATGGCTTCAAAGAAATGGGAACGCCCAGCCTTTATGAATTCAGGATCAACTGTATATAGTCCTTCACGTCTCACTCATCTTGGAAGCTATCAGAACAAGACCTCTGCAAATTTGTCCAGGGAAAATACGGTAGTGCCTGCTCTCGTTTCTCAGACCCCAGCAGATGAAGGTTCTCGAACAGGTCTTAAAGGTTCCAGTTTGGCAAACGTCATGAACAATGGTCCAAGTGCACCAGCTGCCAGAAACACAAGTGGGCAAAGTCTTTCTGCCGGTAGTTCAAAATTCTTGCCTGGGAATGGTGTTCAAGAATCCAGCATTCCAGCTAGCCCAAAATGTATAACATCAGCTAGTCGCCAGTTGACAATATTCTATGCTGGGCAAGCTCATGTTTTTGATGATATCCATCCTACGAAGGCAGATGCCATACTAACTTTAGCTGGATCAAATGGGCGGTCCTGGTCTACAACGTACTCAACGCGGCCAAGGTCTACATTACAATCACTTGCAACTGAAGGCAATGTTTTGTCTGTAGAGAGAGAAAAAGTTGGAAACAGGATGACTGTTAATAGTTCTACTGGTTTGGACATGCCCCTTGAGTTGCAAGCTCTGTTACCTGCTAGAACACATGCTGGTCAGGGAAACAGTCGCTTAGGTACAAATTTTCTGCAGTTTACAACACAAAACATGCAAGCTGCTATAGGTGGAAATGGACACAAGGATAGGACCTTGATGGCTTGTCCCTCCACCTGTAGCAATGAAGGAGACAAGGAGACCATTTGCAATAGTCAGCAGTTAGCGTGA___ACAACCGCAGATGATGACAATTATAGACTCTATGTTTTCTCACATAAGATGCTGTATCATACGTGCAGGTTGAAACCAGTTTCATGACTTTCTTCCTGGTACCTGGCTGCAGAAAATTTTCTTTCCATTAACTTAATCAAAGCTGATGTCTTGTCTGCCTTTACCATTGAGGTACCCCCAGTGTACTGTATTTGGTAATGCAATAGCAACAACCTGTTACCTGCTGTGCAGCACATATTATTAAATCAAGGAATTTTAAAGGT

Fln Alignment:

sp_v1.1_unigene25685___MTFLSSESWGATATARHEEASRSTGVVDGIDXXXXXXXXXXXXXXXXXXVAAAAPCSSDPGSERMSCGKWEGIHGGMGALDSSRSVAGGKKRETSTSSLRESLQDTSESSRGIKMSRFESKXXXXXXXXXXXVLLGMQPPRPTATCQTSTRPSMGANADFMASKKWERPAFMNSGSTVYSPSRLTHLGSYQNKTSANLSRENTVVPALVSQTPADEGSRTGLKGSSLANVMNNGPSAPAARNTSGQSLSAGSSKFLPGNGVQESSIPASPKCITSASRQLTIFYAGQAHVFDDIHPTKADAILTLAGSNGRSWSTTYSTRPRSTLQSLATEGNVLSVEREKVGNRMT-VNSSTGLDMPLELQALLPARTHAGQGNSRLGTNFLQFTTQNMQAAIGGNGHKDRTLMACPSTCSNEGDKETICNSQQLA
B8LLX7_______________MSFPSSESWGATA--RHEEASRSTGVVDGIDHGSSSAGSRLLSGHLCL-AAAAAPCSSDP--ERMSCGKWEGIHGGMSALENNRSVGGGKKRETSTSSLRDSLQDTSESSRGIKMSRFESKDDRRGRQHDDDVLLGMQPPRPTATCQTLTRPSMGVNADFMASKKWERPVFMNTGSSVYSPSRLTHLGNYQNKTSANLSRENTVVPALVSQPPADEGSRTGLKGSSLANLLNNAPSATAARNTSGQSLSAGSSKFLPGNGVQESSIQASPKGIASASRQLTIFYAGQAHVFDDINPTKADDILALAGSNGRSWSTTYSPRPRSTLQSLATEGNVLSVEREKVGNRMTAINSSSGLDMSLELQALLPARTHAGQGNSRL----------------GGNGHKDRPLMACPSTCSNEGDKETICNSQQLA

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1188	83		16		0.994512
1204	87			12	0.992554
1205	87		12		0.992554
1206			12	87	0.992554
1334		90		10	0.90298
1338			10	90	0.90298
1339			10	90	0.90298
1350		90		10	0.90298
1623	37		62		1.0
1627	87		12		0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
197	209	TTA TTA TTA TTA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain