SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene25679

Length: 1183 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene25679

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Thioredoxin fold	IPR012335	-	0.0	67%
Blast2go	Thioredoxin-like fold	IPR012336	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN78

Fln msg:

Fln protein: MVASKVALFALLMVAFTAAKIAAQLPIPPRYDGFVYKDRVTANSLLVEAFFDPLCPDSRDSWWPLKEVLRFYDDKITFIVHPFALPYHHNSFTACRSLHIANRINRAYTYPLLDHFMKHQARFYNKATLQVSPASIIDQIIHFALETTGNSSLTMFESAFQDTTTDMATRISFKYGCSRAVTGTPYFFVNGIPLLNTGETLDYKAWRSIIDPLLAMKTGASYIK*

Protein Length: 226

Fln nts: TTTTGTAAACCGGCACTTTCTTCACTAGGACATTGCCATAGCTAAACTGACCTACTATACTCTACAGTGATTTCCGTTGAATTAAAGAAATAATGCTTTTCGTTGACGATTTTCCAGAGCTTTGTAGGTCCCTTACTACTGCATCTACCACCGTCCATTGCCGATGCCGTGGCTCGGCTGTCCACTCGGACAAGATTATTTATAGATTCATTGCTCCTGGAACGGTGGTGTACAGATACAACGAGAGAAC_-_ATGGTGGCTTCAAAGGTAGCGTTATTCGCACTGTTAATGGTGGCGTTTACAGCAGCGAAGATCGCAGCGCAGCTTCCAATCCCTCCGAGATATGATGGGTTTGTGTACAAGGACAGAGTAACGGCGAATTCATTGCTGGTGGAGGCTTTCTTTGACCCGCTCTGTCCAGACAGCAGGGACTCATGGTGGCCATTGAAGGAGGTCCTCCGCTTCTACGATGACAAGATTACGTTCATTGTTCACCCCTTTGCGTTACCGTACCATCATAATTCATTTACTGCATGTCGTTCATTGCACATTGCAAACAGAATAAACAGGGCCTACACTTATCCTCTACTTGATCATTTTATGAAACATCAGGCAAGGTTTTATAATAAGGCAACCCTTCAAGTTTCTCCCGCTTCTATCATCGACCAAATTATTCATTTTGCATTAGAGACAACGGGGAATTCTTCATTGACCATGTTTGAATCAGCCTTTCAAGACACAACAACAGACATGGCAACAAGGATCTCATTTAAGTATGGTTGTTCAAGAGCAGTGACAGGTACACCTTACTTCTTTGTAAATGGAATCCCATTGCTCAATACTGGCGAAACGTTAGATTACAAGGCGTGGAGGAGTATCATAGATCCATTATTAGCTATGAAGACCGGAGCGTCATATATTAAATGA___TTTATGTATTGTATGGTTTTTTTGATGCATAAGCTTTTATTCACCTCTATTTATGACTCTTATAAGCTTGATTCTTTAGCAATAAGAAGACATCTAATGAATAAATCAACTTATCTGAGAGCATGTAATAATTTAACACAAAGGTGAATGATGATACTAATGTATAATTTCCTAACATTCAATATAAATATGGATGGAATTTATTTATATAATATTACAATAACTAAGCAGATAGCCTAAAGGCCTATCTAACATCTT

Fln Alignment:

sp_v1.1_unigene25679___MVASKVALFALLMVAFTAAKIAAQLPIPPRYDGFVYKDRVTANSLLVEAFFDPLCPDSRDSWWPLKEVLRFYDDKITFIVHPFALPYHHNSFTACRSLHIANRINRAYTYPLLDHFMKHQARFYNKATLQVSPASIIDQIIHFALETTGNSSLTMFESAFQDTTTDMATRISFKYGCSRAVTGTPYFFVNGIPLLNTGETLDYKAWRSIIDPLLAMKTGASYIK
A9NN78_______________MVASKVALFALLMLAFTAARITAQLPIPPRYDGFVYKDRVTANSVLVEAFFDPLCPDSRDSWWPLKEVLRFYGDNITFIVHPFALPYHHNAFIACRSLHIANRIKTAYTYPLLDHFFKHQARFYNKATLQVAPASIINQIIHFALEISGNSSSTMFESAFQDTTTDMATRISFKYGCSRAVTGTPYFFVNGIPLLNIEETIDYKGWKSIIDPLLAMKTRVSYRK

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
178		33	66		0.997452
203		33		66	0.997452
204	66		33		0.997452
206	66	33			0.997452
208	66			33	0.997452
209			33	66	0.997452
210	33			66	0.997452
212	66	33			0.997452
216		66	33		0.997452
221			66	33	0.997452
223	66	33			0.997452
227			66	33	0.997452
638	6	90	3		0.997544
639		6	3	90	0.997952
699		3	90	6	0.997544
702	90	6	3		0.997544
703	3	6		90	0.997544
705		93		6	0.999264
706			6	93	0.999264
707			6	93	0.999264
709	90		3	6	0.997544
710		3	6	90	0.997544
712		6	93		0.999264

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain